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Full information on isolate C4B19 (id:24261)

Projects

This isolate is a member of the following project:

C. coli Attribution dataset
C. coli isolates for attribution analyses.

Provenance/meta data

id
24261
isolate
C4B19
alias
20
country
UK
continent
Europe
year
2003
source
chicken offal or meat
species
Campylobacter coli
sender
Samuel Sheppard, University of Oxford, UK
curator
Auto Tagger
update history
43 updates show details
date entered
2013-05-13
datestamp
2019-06-25

Publications (3)

  • Pearson BM, Louwen R, van Baarlen P, van Vliet AH (2015). Differential Distribution of Type II CRISPR-Cas Systems in Agricultural and Nonagricultural Campylobacter coli and Campylobacter jejuni Isolates Correlates with Lack of Shared Environments. Genome Biol Evol 7:2663-79
  • Sheppard SK, Didelot X, Jolley KA, Darling AE, Pascoe B, Meric G, Kelly DJ, Cody A, Colles FM, Strachan NJ, Ogden ID, Forbes K, French NP, Carter P, Miller WG, McCarthy ND, Owen R, Litrup E, Egholm M, Affourtit JP, Bentley SD, Parkhill J, Maiden MC, Falush D (2013). Progressive genome-wide introgression in agricultural Campylobacter coli. Mol Ecol 22:1051-64
  • Sheppard SK, Didelot X, Meric G, Torralbo A, Jolley KA, Kelly DJ, Bentley SD, Maiden MC, Parkhill J, Falush D (2013). Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter. Proc Natl Acad Sci U S A 110:11923-7

Sequence bin

contigs
691
total length
1,505,418 bp
max length
14,953 bp
mean length
2,179 bp
N50 contig number
157
N50 length (L50)
3,101
N90 contig number
482
N90 length (L90)
992
N95 contig number
570
N95 length (L95)
731
loci tagged
1,408
detailed breakdown
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Schemes and loci

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