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Full information on isolate OXC5833 (id:23665)

Projects

This isolate is a member of the following project:

Oxfordshire Human Surveillance
Defra FSA

This isolate is part of the sentinel surveillance scheme for human Campylobacteriosis in Oxfordshire which is a collaborative project between The Wellcome Trust Sanger Institute and The University of Oxford, funded by The Department for Environment, Food and Rural Affairs and The Food Standards Agency.

Use of Oxfordshire sentinel surveillance data must be cited in any publication or presentation making use of it.

Provenance/meta data

id
23665
isolate
OXC5833
alias
G67303
country
UK
continent
Europe
region
Oxfordshire
year
2011
month
1
sex
male
disease
gastroenteritis
source
human stool
epidemiology
sporadic case
species
Campylobacter jejuni
ENA accession
ERR593725 www.ebi.ac.uk
sender
Alison Cody, Department of Zoology, Oxford University, UK
curator
Auto Tagger
update history
78 updates show details
date entered
2013-01-29
datestamp
2019-06-25

Phenotypic fields

tetracycline genotypes 2
tetO

Publications (3)

  • Cody AJ, McCarthy ND, Bray JE, Wimalarathna HM, Colles FM, Jansen van Rensburg MJ, Dingle KE, Waldenström J, Maiden MC (2015). Wild bird-associated Campylobacter jejuni isolates are a consistent source of human disease, in Oxfordshire, United Kingdom. Environ Microbiol Rep 7:782-8
  • Thépault A, Méric G, Rivoal K, Pascoe B, Mageiros L, Touzain F, Rose V, Béven V, Chemaly M, Sheppard SK (2017). Genome-Wide Identification of Host-Segregating Epidemiological Markers for Source Attribution in Campylobacter jejuni. Appl Environ Microbiol 83:
  • Yahara K, Méric G, Taylor AJ, de Vries SP, Murray S, Pascoe B, Mageiros L, Torralbo A, Vidal A, Ridley A, Komukai S, Wimalarathna H, Cody AJ, Colles FM, McCarthy N, Harris D, Bray JE, Jolley KA, Maiden MC, Bentley SD, Parkhill J, Bayliss CD, Grant A, Maskell D, Didelot X, Kelly DJ, Sheppard SK (2017). Genome-wide association of functional traits linked with Campylobacter jejuni survival from farm to fork. Environ Microbiol 19:361-380

Sequence bin

contigs
965
total length
2,169,521 bp
max length
58,972 bp
mean length
2,249 bp
N50 contig number
80
N50 length (L50)
6,999
N90 contig number
387
N90 length (L90)
922
N95 contig number
569
N95 length (L95)
411
loci tagged
1,397
detailed breakdown
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