PubMLST Database home Contents
Log in
Help

Full information on isolate OXC6359 (id:16156)

Projects

This isolate is a member of the following projects:

Oxfordshire Human Surveillance
Defra FSA

This isolate is part of the sentinel surveillance scheme for human Campylobacteriosis in Oxfordshire which is a collaborative project between The Wellcome Trust Sanger Institute and The University of Oxford, funded by The Department for Environment, Food and Rural Affairs and The Food Standards Agency.

Use of Oxfordshire sentinel surveillance data must be cited in any publication or presentation making use of it.

Oxfordshire Human Surveillance YR1
929 Yr1 WGS isolates with complete MLST profiles

Provenance/meta data

id
16156
isolate
OXC6359
aliases
ERR083975; F24672; SC_RUN_7065_7#13
country
UK
continent
Europe
region
Oxfordshire
year
2011
month
7
sex
female
disease
gastroenteritis
source
human stool
epidemiology
sporadic case
species
Campylobacter jejuni
ENA accession
ERR083975 www.ebi.ac.uk
sender
Alison Cody, Department of Zoology, Oxford University, UK
curator
Sophie Hedges, Oxford University (E-mail: sophie.hedges@zoo.ox.ac.uk)
update history
129 updates show details
date entered
2012-01-18
datestamp
2019-05-14

Publications (4)

  • Brown HL, Reuter M, Hanman K, Betts RP, van Vliet AH (2015). Prevention of biofilm formation and removal of existing biofilms by extracellular DNases of Campylobacter jejuni. PLoS One 10:e0121680
  • Cody AJ, Bray JE, Jolley KA, McCarthy ND, Maiden MCJ (2017). Core Genome Multilocus Sequence Typing Scheme for Stable, Comparative Analyses of Campylobacter jejuni and C. coli Human Disease Isolates. J Clin Microbiol 55:2086-2097
  • Cody AJ, McCarthy ND, Bray JE, Wimalarathna HM, Colles FM, Jansen van Rensburg MJ, Dingle KE, Waldenström J, Maiden MC (2015). Wild bird-associated Campylobacter jejuni isolates are a consistent source of human disease, in Oxfordshire, United Kingdom. Environ Microbiol Rep 7:782-8
  • Cody AJ, McCarthy ND, Jansen van Rensburg M, Isinkaye T, Bentley SD, Parkhill J, Dingle KE, Bowler IC, Jolley KA, Maiden MC (2013). Real-time genomic epidemiological evaluation of human Campylobacter isolates by use of whole-genome multilocus sequence typing. J Clin Microbiol 51:2526-34

Sequence bin

contigs
65
total length
1,873,007 bp
max length
340,107 bp
mean length
28,816 bp
N50 contig number
4
N50 length (L50)
187,393
N90 contig number
11
N90 length (L90)
47,855
N95 contig number
14
N95 length (L95)
11,443
loci tagged
1,578
detailed breakdown
Display

Schemes and loci

Tools

Analysis: