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Full information on isolate LMG 20980 (id:2436)

Provenance/meta data

id
2436
isolate
LMG 20980
aliases
R-3976; W92
species
Burkholderia anthina
genomovar
VII
LMG
20980
country
USA
continent
North America
source
environmental
detail of isolation
Soil
BCC number
BCC0639
year
1997
recA RFLP
T
comments
Type strain. LM-UGent WGS. LMG 20980 was previously ST-86, but WGS revealed ST-1346. Old isolate id 90 was deleted and retired.
sender
Eliza Depoorter, Laboratory of Microbiology, LM-UGent, Ghent University, Belgium
curator
Auto Tagger
update history
7 updates show details
date entered
2017-08-30
datestamp
2019-04-12

Publications (8)

  • Baldwin A, Mahenthiralingam E, Thickett KM, Honeybourne D, Maiden MC, Govan JR, Speert DP, Lipuma JJ, Vandamme P, Dowson CG (2005). Multilocus sequence typing scheme that provides both species and strain differentiation for the Burkholderia cepacia complex. J Clin Microbiol 43:4665-73
  • Coenye T, Vandamme P, LiPuma JJ, Govan JR, Mahenthiralingam E (2003). Updated version of the Burkholderia cepacia complex experimental strain panel. J Clin Microbiol 41:2797-8
  • Lynch KH, Dennis JJ (2008). Development of a species-specific fur gene-based method for identification of the Burkholderia cepacia complex. J Clin Microbiol 46:447-55
  • Mahenthiralingam E, Baldwin A, Drevinek P, Vanlaere E, Vandamme P, LiPuma JJ, Dowson CG (2006). Multilocus sequence typing breathes life into a microbial metagenome. PLoS One 1:e17
  • Rose H, Baldwin A, Dowson CG, Mahenthiralingam E (2009). Biocide susceptibility of the Burkholderia cepacia complex. J Antimicrob Chemother 63:502-10
  • Slinger R, Yan L, Myers R, Ramotar K, St Denis M, Aaron SD (2007). Pyrosequencing of a recA gene variable region for Burkholderia cepacia complex genomovar identification. Diagn Microbiol Infect Dis 58:379-84
  • Vandamme P, Henry D, Coenye T, Nzula S, Vancanneyt M, LiPuma JJ, Speert DP, Govan JR, Mahenthiralingam E (2002). Burkholderia anthina sp. nov. and Burkholderia pyrrocinia, two additional Burkholderia cepacia complex bacteria, may confound results of new molecular diagnostic tools. FEMS Immunol Med Microbiol 33:143-9
  • Zlosnik JE, Hird TJ, Fraenkel MC, Moreira LM, Henry DA, Speert DP (2008). Differential mucoid exopolysaccharide production by members of the Burkholderia cepacia complex. J Clin Microbiol 46:1470-3

Sequence bin

contigs
82
total length
7,606,485 bp
max length
378,566 bp
mean length
92,763 bp
N50 contig number
15
N50 length (L50)
202,119
N90 contig number
37
N90 length (L90)
69,809
N95 contig number
44
N95 length (L95)
42,272
loci tagged
48
detailed breakdown
Display

Schemes and loci

MLST

atpD
41  S 
gltB
31  S 
gyrB
26  S 
recA
31  S 
lepA
19  S 
phaC
19  S 
trpB
538  S 
ST
1346
clonal complex
Not defined

Ribosomal MLST

BACT000001 (rpsA) 
 
BACT000002 (rpsB) 
 
BACT000003 (rpsC) 
 
BACT000004 (rpsD) 
 
BACT000005 (rpsE) 
17826  S 
BACT000006 (rpsF) 
15910  S 
BACT000007 (rpsG) 
18922  S 
BACT000008 (rpsH) 
 
BACT000009 (rpsI) 
18517  S 
BACT000010 (rpsJ) 
 
BACT000011 (rpsK) 
16307  S 
BACT000012 (rpsL) 
8356  S 
BACT000013 (rpsM) 
16285  S 
BACT000014 (rpsN) 
592  S 
BACT000015 (rpsO) 
16012  S 
BACT000016 (rpsP) 
 
BACT000017 (rpsQ) 
27074  S 
BACT000018 (rpsR) 
14347  S 
BACT000019 (rpsS) 
659  S 
BACT000020 (rpsT) 
15445  S 
BACT000021 (rpsU) 
617  S 
BACT000030 (rplA) 
22732  S 
BACT000031 (rplB) 
22246  S 
BACT000032 (rplC) 
19741  S 
BACT000033 (rplD) 
19813  S 
BACT000034 (rplE) 
 
BACT000035 (rplF) 
 
BACT000036 (rplL) 
 
BACT000038 (rplI) 
 
BACT000039 (rplJ) 
17813  S 
BACT000040 (rplK) 
18481  S 
BACT000042 (rplM) 
8495  S 
BACT000043 (rplN) 
16415  S 
BACT000044 (rplO) 
18210  S 
BACT000045 (rplP) 
 
BACT000046 (rplQ) 
16837  S 
BACT000047 (rplR) 
7547  S 
BACT000048 (rplS) 
17207  S 
BACT000049 (rplT) 
8700  S 
BACT000050 (rplU) 
6423  S 
BACT000051 (rplV) 
6410  S 
BACT000052 (rplW) 
7248  S 
BACT000053 (rplX) 
7393  S 
BACT000056 (rpmA) 
15900  S 
BACT000057 (rpmB) 
13498  S 
BACT000058 (rpmC) 
2819  S 
BACT000059 (rpmD) 
5411  S 
BACT000060 (rpmE) 
17378  S 
BACT000061 (rpmF) 
5484  S 
BACT000062 (rpmG) 
586  S 
BACT000063 (rpmH) 
681  S 
BACT000064 (rpmI) 
465  S 
BACT000065 (rpmJ) 
398  S 
rST
Not defined
genus
Not defined
species
Not defined
subspecies
Not defined
lineage
Not defined
sublineage
Not defined
other designation
Not defined
notes
Not defined

Tools

Analysis: