Description of database fields
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| field name | comments | data type | allowed values | required | maximum length (characters) |
|---|---|---|---|---|---|
| id | primary key | integer | - | yes | 5 |
| isolate | isolate name | text | - | yes | 20 |
| aliases | alternative names for isolate | text (multiple) | - | no | - |
| references | PubMed ids that link to publications that describe or include record | integer (multiple) | - | no | - |
| country | country where strain was isolated | text | yes | - | |
| region | region/city etc inside country | text | - | no | 50 |
| year | year of isolation | integer | min: 1900; max: 2021 | no | 4 |
| age_yr | age in years | integer | min: 0; max: 120 | no | - |
| age_mth | month part of age (0-11) for patients under 1 year old | integer | min: 0; max: 11 | no | - |
| sex | sex of patient/carrier | text |
male
female |
no | - |
| disease | please put other diseases in detailed_disease field | text |
bronchopulmonary dysplasia
carrier chorioamnionitis infertility inflammation non-gonococcal urethritis premature birth other |
no | - |
| source | biological source of sample; put other sources in detailed_source field | text |
cervical swab
semen urethral swab urine vaginal swab other |
no | - |
| species | text |
Ureaplasma urealyticum
Ureaplasma parvum |
yes | - | |
| serovar | integer | min: 1; max: 14 | no | 2 | |
| bioproject_accession | ENA/SRA bioproject accession number | text (multiple) | - | no | 20 |
| biosample_accession | ENA/SRA biosample accession number | text (multiple) | - | no | 20 |
| ENA_run_accession | ENA/SRA accession number to access short read data. This should start either ERR, SRR, or DRR. | text | - | no | 15 |
| comments | any other comments | text | - | no | 1000 |
| sender | sender unique name, link to users | integer | Click for list of sender ids | yes | 4 |
| curator | curator who entered data,link to users | integer | Click for list of curator ids | yes | 4 |
| date_entered | date first entered | date | - | yes | 10 |
| datestamp | date last modified | date | - | yes | 10 |