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Allele information - SPNE01161 (rpoC): 4

Provenance/meta data

locus
SPNE01161 (rpoC)
allele
4
sequence
GTGGTTGATG TAAATCGTTT TAAAAGTATG CAAATCACCC TAGCTTCTCC AAGTAAAGTC CGTTCATGGT CTTATGGAGA AGTCAAAAAA CCTGAAACAA TCAATTATCG TACCTTGAAA CCAGAACGTG AAGGACTCTT TGATGAAGTG ATCTTTGGTC CTACAAAAGA CTGGGAATGT GCTTGTGGTA AGTACAAACG CATTCGTTAC AGAGGAATTG TTTGTGACCG CTGTGGGGTT GAAGTAACGC GTACGAAAGT TCGTCGTGAG CGTATGGGAC ATATCGAATT GAAAGCTCCT GTATCTCACA TCTGGTACTT CAAGGGGATT CCAAGCCGTA TGGGCTTGAC CCTTGATATG AGCCCTCGTG CCCTCGAGGA AGTTATCTAC TTTGCGGCTT ATGTGGTGAT TGATCCTAAG GATACACCAC TTGAGCACAA GTCTATCATG ACAGAGCGCG AATACCGAGA GCGCTTGCGC GAATATGGTT ATGGTTCATT TGTTGCTAAG ATGGGTGCGG AAGCCATCCA AGACCTTTTG AAGCAAGTAG ATCTTGAAAA AGAAATTGCT GAACTCAAAG AAGAATTGAA AACTGCTACT GGACAAAAAC GTGTCAAAGC CATCCGTCGT TTGGATGTTT TGGATGCCTT TTACAAGTCT GGAAACAAAC CTGAATGGAT GATTCTTAAC ATCCTTCCGG TTATCCCACC AGATCTTCGT CCAATGTTGC AGTTGGATGG TGGCCGTTTT GCCTCATCTG ACTTGAATGA CCTTTACCGC CGTGTTATCA ACCGTAACAA CCGTTTGGCT CGTTTGCTTG AGTTAAATGC ACCAGGTATC ATCGTTCAAA ATGAGAAGCG TATGCTTCAA GAAGCAGTTG ACGCTTTGAT TGACAATGGT CGTCGTGGTC GTCCAATCAC AGGACCAGGT AGCCGTCCAT TGAAATCATT GAGCCACATG CTTAAAGGTA AACAAGGACG CTTCCGTCAA AACTTGCTCG GTAAACGTGT TGACTTCTCA GGACGTTCCG TTATCGCCGT TGGTCCAACT CTTAAGATGT ACCAATGTGG TGTGCCACGT GAAATGGCGA TTGAACTCTT TAAACCATTT GTCATGCGTG AAATCGTTGC CCGTGATATC GTGCAAAACG TCAAAGCAGC TAAACGCTTG GTGGAACGCG GAGATGAGCG TATCTGGGAT ATCCTTGAAG AAGTGATTAA AGAACACCCA GTGCTTTTGA ACCGCGCACC GACCCTTCAC CGTTTGGGTA TCCAAGCCTT CGAGCCAGTC TTGATTGATG GTAAGGCTCT TCGCTTGCAC CCACTTGTCT GTGAAGCCTA CAATGCTGAC TTTGACGGGG ACCAAATGGC CATCCACGTA CCACTTTCAG AAGAAGCACA AGCAGAAGCT CGTATCCTCA TGCTAGCTGC TGAGCACATC TTGAACCCGA AAGATGGGAA ACCGGTAGTT ACTCCATCTC AGGACATGGT TTTGGGTAAC TACTACTTGA CCATGGAAGA AGCTGGTCGC GAAGGTGAAG GAATGGTCTT CAAAGACCGT GACGAAGCGG TTATGGCTTA CCGCAATGGT TATGTTCACC TCCACTCACG TGTTGGTATC GCAACAGACA GCCTCAACAA GCCTTGGACA GAAGAGCAAA GACATAAGGT CTTGCTTACA ACAGTTGGTA AAATTCTCTT CAACGATATC ATGCCAGAGG GGCTACCATA CTTGCAAGAA CCAAACAATG CCAACTTGAC AGAAGGTGTT CCAGCTAAAT ACTTCTTGCC ACTTGGTGGA GCTATCAAGG AAGCTATCAG CAATCTTGAG CTCAACCCTC CATTCAAGAA GAAAAACCTC GGAAATATCA TCGCTGAAAT CTTCAAACGT TTCCGTACGA CAGAAACTTC TGCCCTACTT GACCGCATGA AGAACCTCGG TTACCACCAC TCAACTCTTG CAGGATTGAC AGTGGGTATT GCCGATATCC CAGTCGTTGA TGACAAGGCT GAAATCATTG AAGAATCACA CAAACGTGTC GAACAAATCA CCAAACAATT CCGTCGTGGT ATGATCACAG ACGACGAGCG TTACAATGCT GTTACAGCTG AATGGCGTGC TGCCCGTGAA AAACTTGAGA AACGCTTGAT TGCTAATCAA GATCCTAAGA ACCCAATCGT TATGATGATG GACTCTGGAG CCCGTGGTAA CATCTCAAAC TTCTCACAGC TTGCCGGTAT GCGTGGTCTG ATGGCTGCTC CGAATGGACG TATCATGGAA TTGCCAATCC TTTCAAACTT CCGCGAAGGT TTGTCGGTAT TGGAAATGTT CTTCTCAACT CACGGTGCTC GTAAAGGTAT GACCGATACG GCCCTTAAGA CAGCCGACTC AGGTTACTTG ACTCGTCGTT TGGTCGACGT TGCCCAAGAC GTTATCATCC GTGAGGACGA CTGTGGAACT GACCGTGGTC TCTTGATCCG TTCTATCGCA GAAGGAAAAG AGATGATCGA GTCTCTCGAA GAGCGTCTCA ACGGTCGTTA CACTAAGAAA ACTGTTAAAC ATCCAGAAAC TGGTGCAGTG ATTATTGGTC CAAATGAATT GATTACAGAA GACAAGGCGC GTGAAATTGT CAATGCTGGT GTGGAAGAAG TGACTATCCG TTCTGTATTT ACATGTAACA CTCGTCACGG TGTCTGCCGT CACTGTTACG GTATCAACTT GGCGACTGGT GATGCGGTTG AAGTTGGTGA AGCAGTTGGT ACAATCGCTG CCCAATCTAT CGGGGAACCT GGTACACAGC TTACAATGCG TACCTTCCAC ACAGGTGGGG TTGCCTCAAA TACCGATATC ACTCAGGGTC TTCCTCGTGT CCAAGAAATC TTTGAAGCCC GCAATCCTAA AGGGGAAGCG GTTATTACAG AGGTTAAAGG ACAAGTTACT GCTATCGAAG AAGATGCATC AACTCGTACC AAGAAAGTCT TTGTTAAGGG TGAAACTGGC GAAGGTGAAT ATGTCGTTCC ATTTACAGCT CGTATGCGTG TCGAAGTTGG GGGCCAAGTA GCGCGTGGTG CTGCTCTGAC AGAAGGTTCT ATCCAACCAA AACGTCTCCT TGCAGTTCGT GATGTCTTGT CAGTTGAAAC GTACCTTCTC GGTGAAGTAC AAAAAGTTTA CCGTAGCCAA GGGGTAGAAA TCGGTGACAA ACACATCGAG GTAATGGTTC GTCAAATGAT CCGTAAAGTC CGTGTCATGG ATCCAGGTGA TACAGATCTT CTCATGGGTA CCCTCATGGA TATCAATGAC TTTACAGATG CCAACAAAGA TGTCCTTATC GCAGGTGGAG TTCCAGCGAC AGGTCGCCCA GTCCTTATGG GAATTACCAA AGCCTCACTT GAAACAAACA GTTTCTTGTC AGCGGCTTCC TTCCAGGAAA CAACTCGTGT CCTTACTGAC GCAGCTATCC GTGGTAAGAA AGACCATCTC CTTGGACTTA AAGAAAATGT TATCATCGGT AAGATCATCC CAGCTGGTAC TGGTATGGCC CGTTACCGTA ACCTTGAACC ACATGCTGTC AACGAAGAAG AATACCTTAA TCCTCCAGTA GAGGAAGAAG GAAATGAAGA AACAACAGAA GTAGTTGTGG ATACTGCCGT TGAAACTGTG GAAGAAACAG TAGAATAA
length
3678
status
unchecked
date entered
2019-12-11
datestamp
2019-12-11
sender
Melissa Jansen van Rensburg, University of Oxford, UK
curator
Keith Jolley, University of Oxford, UK

Profiles containing this allele

cgMLST

Isolate databases

PubMLST isolates
Contains data for a collection of isolates that represent the total known diversity of S. pneumoniae. For every allelic profile in the profiles database there is at least one corresponding isolate deposited here. Any isolate may be submitted to this database and consequently it should be noted that it does not represent a population sample.