Search or browse database

Enter search criteria or leave blank to browse all records. Modify form parameters to filter or enter a list of values.

Filters

Publication:
Project:
Private project:
MLST profiles:
Ribosomal MLST pro…
Include old record versions

Add filter: Add

Display/sort options

Order by:
Display: records per page

Action Reset

Modify form parameters

Click to add or remove additional query terms:

Provenance fields
Allele designations/scheme field values
Allele designation counts
Allele designation status
Sequence bin
Tagged sequence counts
Tagged sequence status
Attribute values list
Filters

linked to any publication
not linked to any publication
Andam et al. 2017 J Clin Microbiol 55:1104-1115
Angiuoli et al. 2011 Bioinformatics 27:334-42
Appelbaum et al. 1996 Clin Infect Dis 23:712-7
Ardanuy et al. 2006 Antimicrob Agents Chemother 50:3162-5
Arguedas et al. 2003 Pediatr Infect Dis J 22:1063-8
Arushothy et al. 2018 Genome Announc 6:
Azarian et al. 2018 PLoS Pathog 14:e1006966
Baek et al. 2019 Microbiol Immunol 63:206-212
Bastiaens et al. 2018 Antimicrob Resist Infect Control 7:158
Bidossi et al. 2012 PLoS One 7:e33320
Bogaardt et al. 2015 BMC Genomics 16:554
Bogaert et al. 2006 Microbiology 152:377-85
Brandileone et al. 1998 Microb Drug Resist 4:209-17
Bricio-Moreno et al. 2017 J Infect Dis 216:1318-1327
Browall et al. 2014 J Infect Dis 209:377-88
Brueggemann et al. 2003 J Clin Microbiol 41:4966-70
Brueggemann et al. 2003 J Infect Dis 187:1424-32
Brueggemann et al. 2017 Sci Rep 7:42976
Břinda et al. 2020 Nat Microbiol 5:455-464
Camilli et al. 2011 BMC Microbiol 11:25
Capeding et al. 1995 J Clin Microbiol 33:3077-9
Chaguza et al. 2020 Clin Infect Dis 70:1294-1303
Chaguza et al. 2020 Nat Commun 11:3442
Chang et al. 2018 J Clin Microbiol 56:
Chang et al. 2019 Microbiol Resour Announc 8:
Chewapreecha et al. 2014 Nat Genet 46:305-9
Chewapreecha et al. 2014 PLoS Genet 10:e1004547
Choi et al. 2014 Genome Announc 2:
Cleary et al. 2016 Genome Biol Evol 8:1243-51
Coffey et al. 1991 Mol Microbiol 5:2255-60
Coffey et al. 1996 Microbiology 142 ( Pt 10):2747-57
Coleman et al. 2011 J Infect Dis 203:1264-73
Cornick et al. 2014 J Antimicrob Chemother 69:368-74
Cremers et al. 2015 Sci Rep 5:14952
Crisafulli et al. 2013 Infect Genet Evol 13:151-61
Croucher et al. 2009 J Bacteriol 191:1480-9
Croucher et al. 2011 BMC Genomics 12:120
Croucher et al. 2011 Science 331:430-4
Croucher et al. 2013 Nat Genet 45:656-63
Croucher et al. 2013 PLoS Genet 9:e1003868
Croucher et al. 2014 BMC Biol 12:49
Croucher et al. 2014 Genome Biol Evol 6:1589-602
Croucher et al. 2014 Nat Commun 5:5471
Croucher et al. 2015 PLoS Genet 11:e1005095
Croucher et al. 2015 Sci Data 2:150058
Dagan et al. 1996 J Infect Dis 174:1352-5
Davidson et al. 1994 J Infect Dis 170:368-76
de Alvarenga Mudadu et al. 2015 Appl Biochem Biotechnol 175:3360-70
Denapaite et al. 2012 Microb Drug Resist 18:344-58
Deng et al. 2016 Clin Infect Dis 62:1126-1132
Dicuonzo et al. 2002 J Clin Microbiol 40:3660-5
Ding et al. 2009 BMC Genomics 10:158
Donati et al. 2010 Genome Biol 11:R107
Donner et al. 2017 Genome Announc 5:
Dopazo et al. 2001 Microb Drug Resist 7:99-125
Dunne et al. 2020 J Infect Dis [Epub ahead of print]:
Enright et al. 1998 Microbiology 144 ( Pt 11):3049-60
Everett et al. 2012 PLoS One 7:e44250
Feng et al. 2009 Genome Res 19:1214-23
Frazão et al. 2013 PLoS One 8:e74867
Gao et al. 2019 Phys Biol 16:026002
Garbom et al. 2004 Infect Immun 72:1333-40
Gherardi et al. 1999 J Clin Microbiol 37:3725-30
Gherardi et al. 2000 J Infect Dis 181:216-29
Gladstone et al. 2015 Vaccine 33:2015-21
Gladstone et al. 2017 Microb Genom 3:e000119
Gladstone et al. 2019 EBioMedicine 43:338-346
Gladstone et al. 2020 Microb Genom 6:
Gratten et al. 1998 Commun Dis Intell 22:265-9
Guo et al. 2012 Int J Mol Sci 13:3134-44
Gupta et al. 2017 Bioinformatics 33:119-121
Gámez et al. 2018 BMC Genomics 19:10
Hahn et al. 2015 Genome Announc 3:
Hathaway et al. 2004 J Bacteriol 186:3721-9
Haubold et al. 2015 Bioinformatics 31:1169-75
Hawkins et al. 2017 Int J Med Microbiol 307:415-421
Hawkins et al. 2017 J Glob Antimicrob Resist 11:148-151
Hedlund et al. 2003 Scand J Infect Dis 35:452-8
Henriques Normark et al. 2001 J Infect Dis 184:861-9
Hiller et al. 2007 J Bacteriol 189:8186-95
Hiller et al. 2010 PLoS Pathog 6:e1001108
Hiller et al. 2011 PLoS One 6:e28850
Hilty et al. 2014 Genome Biol Evol 6:3281-94
Homøe et al. 1996 Clin Infect Dis 23:1081-90
Hoskins et al. 2001 J Bacteriol 183:5709-17
Hu et al. 2012 PLoS One 7:e47983
Ikryannikova et al. 2016 Eur J Clin Microbiol Infect Dis 35:119-30
Ip et al. 2015 Genome Announc 3:
Jakobsson et al. 2017 Genome Announc 5:
Jauneikaite et al. 2017 J Clin Microbiol 55:776-782
Jindal et al. 2018 J Biomed Sci 25:15
Junges et al. 2019 Microbiol Resour Announc 8:
Kapatai et al. 2016 PeerJ 4:e2477
Karlin et al. 2004 Proc Natl Acad Sci U S A 101:6182-7
Karlsson et al. 2018 PLoS One 13:e0208804
Keller et al. 2013 Genome Announc 1:
Kellner et al. 1998 Pediatr Infect Dis J 17:279-86
Kilian et al. 2014 MBio 5:e01490-14
Kjeldsen et al. 2018 Carbohydr Res 463:24-31
Ko et al. 2013 J Clin Microbiol 51:3395-9
Koeck et al. 2005 BMC Microbiol 5:66
Kwun et al. 2019 Genes (Basel) 10:
Lanie et al. 2007 J Bacteriol 189:38-51
Lees et al. 2016 Nat Commun 7:12797
Lees et al. 2017 Microb Genom 3:e000103
Lees et al. 2018 Wellcome Open Res 3:33
Lees et al. 2019 Nat Commun 10:2176
Lefèvre et al. 1995 Eur J Clin Microbiol Infect Dis 14:491-7
Leimkugel et al. 2005 J Infect Dis 192:192-9
Li et al. 2012 J Bacteriol 194:3294-5
Li et al. 2015 BMC Genomics 16:369
Lin et al. 2012 Genomics 100:370-9
Lin et al. 2017 Genetics 205:891-917
Lin et al. 2019 IEEE/ACM Trans Comput Biol Bioinform 16:1274-1279
Llull et al. 1999 J Exp Med 190:241-51
Llull et al. 2000 Microb Drug Resist 6:269-75
Loman et al. 2013 PLoS One 8:e64731
Makarewicz et al. 2017 PLoS One 12:e0169370
Margulies et al. 2005 Nature 437:376-80
Marri et al. 2006 Mol Biol Evol 23:2379-91
Marttinen et al. 2012 Nucleic Acids Res 40:e6
Martín-Galiano et al. 2004 Microbiology 150:2313-25
Martín-Galiano et al. 2017 Genome Biol Evol 9:350-361
Moschioni et al. 2013 PLoS One 8:e61003
Moscoso et al. 2009 DNA Res 16:177-86
Mostowy et al. 2017 Mol Biol Evol 34:1167-1182
Mrázek et al. 2002 Nucleic Acids Res 30:4216-21
Muzzi et al. 2008 PLoS One 3:e3660
Nagaoka et al. 2019 Microbiol Resour Announc 8:
Nakano et al. 2019 Antimicrob Agents Chemother 63:
Ndlangisa et al. 2016 BMC Microbiol 16:126
No authors listed 1997 JAMA 277:621
Numminen et al. 2014 Proc Biol Sci 281:20141324
Nunes et al. 2005 J Clin Microbiol 43:1285-93
Nunes et al. 2009 J Clin Microbiol 47:472-4
Oggioni et al. 2001 FEMS Microbiol Lett 200:137-43
Ohkoshi et al. 2018 J Infect Chemother 24:674-681
Oliver et al. 2013 J Biol Chem 288:25976-85
Overweg et al. 1999 J Clin Microbiol 37:1739-45
Pan et al. 2018 Infect Drug Resist 11:659-670
Perez-Maya et al. 2016 Genome Announc 4:
Perez-Maya et al. 2016 Genome Announc 4:
Piet et al. 2014 J Infect Dis 209:1781-91
Pillai et al. 2009 BMC Genomics 10:642
Porat et al. 2001 J Clin Microbiol 39:1827-32
Porat et al. 2004 J Infect Dis 189:385-92
Quirk et al. 2018 J Clin Microbiol 56:
Quirk et al. 2019 J Clin Microbiol 57:
Rezaei Javan et al. 2018 Front Microbiol 9:2012
Rezaei Javan et al. 2019 Nat Commun 10:4852
Ribeiro et al. 2012 Genome Res 22:2270-7
Ribeiro-Gonçalves et al. 2016 Nucleic Acids Res 44:W246-51
Rieger et al. 2017 Genome Announc 5:
Rieger et al. 2017 mSphere 2:
Robinson et al. 2002 J Bacteriol 184:6367-75
Roca et al. 2015 Vaccine 33:7144-7151
Rockett et al. 2018 Sci Rep 8:16969
Sanguinetti et al. 2012 PLoS Comput Biol 8:e1002668
Sato et al. 2017 Genome Announc 5:
Schaffner et al. 2014 BMC Microbiol 14:210
Scott et al. 2019 Microbiol Resour Announc 8:
Shaltout et al. 1989 J Trop Med Hyg 92:402-6
Shelyakin et al. 2019 BMC Evol Biol 19:83
Sheppard et al. 2019 Genes (Basel) 10:
Sibold et al. 1992 Infect Immun 60:4119-26
Skwark et al. 2017 PLoS Genet 13:e1006508
Sousa et al. 2005 J Clin Microbiol 43:4696-703
Sui et al. 2013 Genome Announc 1:
Sulikowska et al. 2004 J Clin Microbiol 42:3942-9
Swetha et al. 2014 Genomics 104:582-6
Syrogiannopoulos et al. 1997 Clin Infect Dis 25:188-94
Syrogiannopoulos et al. 2000 Int J Antimicrob Agents 16:219-24
Sá-Leão et al. 2001 J Infect Dis 184:1206-10
Sá-Leão et al. 2002 J Infect Dis 186:966-75
Sá-Leão et al. 2006 Microbiology 152:367-76
Tettelin et al. 2001 Science 293:498-506
Thomas et al. 2011 J Bacteriol 193:3409-10
Thorpe et al. 2017 Genetics 206:363-376
Valentino et al. 2014 Nat Commun 5:5411
van Tonder et al. 2014 PLoS Comput Biol 10:e1003788
van Tonder et al. 2016 Microb Genom 2:000090
van Tonder et al. 2019 Microb Genom 5:
Vathanophas et al. 1990 Rev Infect Dis 12 Suppl 8:S957-65
Vetrivel et al. 2011 Hugo J 5:25-34
Wadood et al. 2018 Microb Pathog 115:194-198
Waites et al. 2003 J Clin Microbiol 41:5787-91
Wasfy et al. 2005 J Antimicrob Chemother 55:958-64
Williams et al. 2012 PLoS One 7:e26742
Wyres et al. 2012 Genome Biol 13:R103
Wyres et al. 2013 BMC Genomics 14:500
Wyres et al. 2013 J Infect Dis 207:439-49
Yang Baek et al. 2018 Int J Med Microbiol 308:986-989
Zhao et al. 2018 BMC Genomics 19:36

belonging to any project
not belonging to any project
Archived Pneumococcal Genome Library v1
PubMLST Pneumococcal Genome Library