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Provenance fields
Allele designations/scheme field values
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Sequence bin
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Isolate count

30,142

94 [month]

Genome count

30,142

94 [month]

30,142 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields								MLST
id	isolate	aliases	country	year	disease	source category	source	arcC	aroE	glpF	gmk	pta	tpi	yqiL	ST	clonal complex
3532	Saitama9		Japan	2012	other	human	pus	3	124	1	1	1	410	40	1558	CC97
3533	Saitama11		Japan	2013	other	human	pus	3	549	1	1	1	1	40	1566	CC1
3625	ERR1197981		Unknown		unknown	unknown	unknown	2	2	2	2	6	3	2	30	CC30
3882	ERR410047		Unknown		unknown	unknown	unknown	2	2	2	2	2	2	2	39	CC30
5329	ERR410050		Unknown		unknown	unknown	unknown	3	3	1	1	4	4	3	8	CC8
5959	ERR410059		Unknown		unknown	unknown	unknown	8	2	2	2	6	3	2	34	CC30
5960	ERR410074		Unknown		unknown	unknown	unknown	8	2	2	2	6	3	2	34	CC30
5965	ERR410082		Unknown		unknown	unknown	unknown	1	1	1	1	1	1	1	1	CC1
5966	ERR410106		Unknown		unknown	unknown	unknown	7	6	1	5	8	8	6	22	CC22
6087	ERR211639		Unknown		unknown	unknown	unknown	6	57	45	2	7	58	52	130
6088	ERR163446		Unknown		unknown	unknown	unknown	14	16	11	2	13	336	14	3121
6089	SRR445025	199/08	Slovenia	2008	unknown	unknown	unknown	3	35	19	2	20	26	39	398
6090	SRR445026	DC57_BP_GEN_I_7	USA	2009	unknown	unknown	unknown	3	35	19	2	20	26	39	398
6091	SRR445027	12152-5	Italy	2008	unknown	unknown	unknown	3	35	19	2	20	26	39	398
6092	SRR445028	25207-25126/08	Poland	2008	unknown	unknown	unknown	3	35	19	2	20	26	39	398
6093	SRR445029	30116	Italy	2008	unknown	unknown	unknown	3	35	19	2	20	26	39	398
6094	SRR445030	44523-1	Italy	2008	unknown	unknown	unknown	3	35	19	2	20	26	39	398
6095	SRR445031	6919/08	Poland	2008	unknown	unknown	unknown	3	35	19	2	20	26	39	398
6096	SRR445032	41091	Canada	2007	unknown	unknown	unknown	3	35	19	2	20	26	39	398
6097	SRR445033	7-109	Canada	2007	unknown	unknown	unknown	3	35	19	2	20	26	39	398
6098	SRR445034	41102	Canada	2007	unknown	unknown	unknown	3	35	19	2	20	26	39	398
6099	SRR445035	41104	Canada	2007	unknown	unknown	unknown	3	35	19	2	20	26	39	398
6100	SRR445036	41093	Canada	2007	unknown	unknown	unknown	3	35	19	2	20	26	39	398
6101	SRR445037	M2009_10003479	Hungary	2009	unknown	unknown	unknown	3	35	19	2	20	26	39	398
6102	SRR445038	M2009_10004208	Hungary	2009	unknown	unknown	unknown	3	35	19	2	20	26	39	398

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Aalbæk et al. 2015 Genome Announc 3:
Agnoletti et al. 2014 Vet Microbiol 170:172-7
Aires de Sousa et al. 2003 J Clin Microbiol 41:159-63
Aires de Sousa et al. 2003 J Clin Microbiol 41:2027-32
Alvarez et al. 2006 Emerg Infect Dis 12:2000-1
Amorim et al. 2002 Microb Drug Resist 8:301-9
Brailsford et al. 2018 Vox Sang [Epub ahead of print]:
Budd et al. 2015 PLoS One 10:e0134592
Busche et al. 2018 Mol Cell Proteomics 17:2412-2433
Bünter et al. 2017 Res Microbiol 168:130-138
Costa et al. 2013 Antibiotics (Basel) 2:83-99
Crisóstomo et al. 2001 Proc Natl Acad Sci U S A 98:9865-70
Dabul et al. 2014 Epidemiol Infect 142:479-83
Day et al. 2001 Science 292:114-6
Devriese 1984 J Appl Bacteriol 56:215-20
Diep et al. 2006 Lancet 367:731-9
Drougka et al. 2012 Indian J Med Microbiol 30:232-6
Enright et al. 2002 Proc Natl Acad Sci U S A 99:7687-92
Fattom et al. 1990 Infect Immun 58:2367-74
Fernandez et al. 2013 Infect Genet Evol 14:401-5
Founou et al. 2019 Zoonoses Public Health 66:512-525
Francis et al. 2000 Infect Immun 68:3594-600
Gardella et al. 2011 Infect Genet Evol 11:1066-71
Gillaspy et al. 1995 Infect Immun 63:3373-80
Gillespie et al. 1985 J Med Microbiol 19:137-47
Gostev et al. 2017 Infect Genet Evol 53:189-194
Holt et al. 2011 Genome Biol Evol 3:881-95
Jenney et al. 2014 BMC Infect Dis 14:160
Jiang et al. 2019 J Antimicrob Chemother 74:2462-2464
Keane et al. 2013 Vet Rec 173:17
Krupa et al. 2015 Biomed Res Int 2015:141475
Kumburu et al. 2018 Biomed Res Int 2018:2087693
Lee et al. 2021 Foodborne Pathog Dis 18:378-387
Li et al. 2006 Int J Infect Dis 10:482-3
Li et al. 2022 Vet Microbiol 265:109329
Liou et al. 2020 Microb Genom 6:
Loza-Correa et al. 2017 Transfusion 57:1299-1303
López Furst et al. 2013 PLoS One 8:e78303
Mariem et al. 2013 BMC Microbiol 13:2
McDonald et al. 2006 J Clin Microbiol 44:3720-7
Melter et al. 2003 J Clin Microbiol 41:4998-5005
Monecke et al. 2009 Eur J Clin Microbiol Infect Dis 28:1159-65
Moon et al. 2016 J Microbiol Biotechnol 26:799-805
Musumeci et al. 2016 New Microbiol 39:269-273
Ng et al. 2009 J Clin Microbiol 47:2295-300
Okuda et al. 2016 Eur J Clin Microbiol Infect Dis 35:1963-1973
Oliveira et al. 2001 Microb Drug Resist 7:349-61
Oliveira et al. 2002 Antimicrob Agents Chemother 46:2155-61
Oliveira et al. 2022 Front Microbiol 13:846653
Patrone et al. 1975 Riv Emoter Immunoematol 22:158-70
Pearson et al. 2021 Microbiol Resour Announc 10:e0044921
Price et al. 2012 MBio 3:
Randad et al. 2021 Emerg Infect Dis 27:740-748
Richardson et al. 2018 Nat Ecol Evol 2:1468-1478
Roberts et al. 2020 Antibiotics (Basel) 9:
Sassi et al. 2015 Genome Announc 3:
Schaumburg et al. 2015 Int J Infect Dis 34:1-2
Scott 1969 J Med Microbiol 2:253-60
Tong et al. 2009 J Infect Dis 199:1461-70
Vandenesch et al. 2003 Emerg Infect Dis 9:978-84
Vautor et al. 2005 J Vet Diagn Invest 17:363-8
Zadoks et al. 2000 J Clin Microbiol 38:1931-9
Zhao et al. 2021 Front Med (Lausanne) 8:761894
Zou et al. 2022 Adv Sci (Weinh) 9:e2103388