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Microreact - Staphylococcus aureus isolates

This plugin uploads data for analysis within the Microreact online service:

Microreact: visualizing and sharing data for genomic epidemiology and phylogeography

Microreact is developed by:

  • Khalil Abudahab
  • Richard Goater
  • Artemij Fedosejev
  • Jyothish NT
  • Stephano

in the Aanensen Research Group at Imperial College London and The Centre for Genomic Pathogen Surveillance.

Web site:
Publication: Argimón at al. (2016) Microreact: visualizing and sharing data for genomic epidemiology and phylogeography. Microb Genom 2:e000093.

This tool will generate neighbor-joining trees from concatenated nucleotide sequences. Only DNA loci that have a corresponding database containing allele sequence identifiers, or DNA and peptide loci with genome sequences, can be included. Please check the loci that you would like to include. Alternatively select one or more schemes to include all loci that are members of the scheme.

Analysis is limited to 2,000 records or 100,000 sequences (records x loci).


Modify the values below - these will be displayed within the created Microreact project.

Include fields

Select additional fields to include in Microreact data table.-
(isolate, country and year are always included).