Full information on isolate SAL_MA0292AA_AS (id:17754)
Provenance/primary metadata
- id
- 17754
- isolate
- SAL_MA0292AA_AS
- aliases
- SAL_FA9380AA; SRR3223738
- subspecies
- enterica
- serovar
- Enteritidis
- country
- Indonesia
- continent
- Asia
- detailed source
- Asia
- comments
- Enterobase Isolate
- sender
- Maddi Pearce, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 2 updates show details
- date entered
- 2018-11-08
- datestamp
- 2018-11-10
Sequence bin
- contigs
- 49
- total length
- 4,686,974 bp
- max length
- 563,009 bp
- mean length
- 95,653 bp
- N50 contig number
- 7
- N50 length (L50)
- 219,582
- N90 contig number
- 21
- N90 length (L90)
- 59,715
- N95 contig number
- 26
- N95 length (L95)
- 46,220
- loci tagged
- 6,537
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Salm_cgc_200 | SalmcgMLST v1.0 | Single-linkage | 200 | experimental | group: 1 (54 isolates) |
| Salm_cgc_100 | SalmcgMLST v1.0 | Single-linkage | 100 | experimental | group: 185 (9 isolates) |
| Salm_cgc_50 | SalmcgMLST v1.0 | Single-linkage | 50 | experimental | group: 1596 (2 isolates) |
Schemes and loci
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