Full information on isolate 32387 (id:17233)
Provenance/primary metadata
- id
- 17233
- isolate
- 32387
- aliases
- SAL_BA9990AA; SRR1968988
- subspecies
- enterica
- serovar
- Java
- detailed source
- I
- comments
- Enterobase Isolate
- sender
- Maddi Pearce, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 2 updates show details
- date entered
- 2018-09-26
- datestamp
- 2018-09-27
Sequence bin
- contigs
- 55
- total length
- 4,672,392 bp
- max length
- 497,362 bp
- mean length
- 84,953 bp
- N50 contig number
- 7
- N50 length (L50)
- 258,015
- N90 contig number
- 21
- N90 length (L90)
- 56,836
- N95 contig number
- 25
- N95 length (L95)
- 45,909
- loci tagged
- 6,570
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Salm_cgc_200 | SalmcgMLST v1.0 | Single-linkage | 200 | experimental | group: 1 (54 isolates) |
| Salm_cgc_100 | SalmcgMLST v1.0 | Single-linkage | 100 | experimental | group: 185 (9 isolates) |
| Salm_cgc_50 | SalmcgMLST v1.0 | Single-linkage | 50 | experimental | group: 241 (7 isolates) |
| Salm_cgc_25 | SalmcgMLST v1.0 | Single-linkage | 25 | experimental | group: 325 (7 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: