Full information on isolate SRR1646145 (id:10400)
Provenance/primary metadata
- id
- 10400
- isolate
- SRR1646145
- alias
- H122920486
- subspecies
- enterica
- serovar
- Java
- year
- 2012
- source
- clinical
- detailed source
- Human
- ENA accession
- SRR1646145 www.ebi.ac.uk
- rMLST database accession
- 112465
- sender
- Maddi Pearce, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 16 updates show details
- date entered
- 2015-05-14
- datestamp
- 2016-09-21
Sequence bin
- contigs
- 135
- total length
- 4,718,689 bp
- max length
- 229,026 bp
- mean length
- 34,954 bp
- N50 contig number
- 18
- N50 length (L50)
- 88,004
- N90 contig number
- 58
- N90 length (L90)
- 26,262
- N95 contig number
- 69
- N95 length (L95)
- 16,876
- loci tagged
- 6,546
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Salm_cgc_200 | SalmcgMLST v1.0 | Single-linkage | 200 | experimental | group: 1 (54 isolates) |
| Salm_cgc_100 | SalmcgMLST v1.0 | Single-linkage | 100 | experimental | group: 185 (9 isolates) |
| Salm_cgc_50 | SalmcgMLST v1.0 | Single-linkage | 50 | experimental | group: 241 (7 isolates) |
| Salm_cgc_25 | SalmcgMLST v1.0 | Single-linkage | 25 | experimental | group: 325 (7 isolates) |
Schemes and loci
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