Database status

Sequences

Total

2,001,642

Last updated

2023-03-31

Schemes

Schemes are collections of loci. They may be indexed, in which case they have a primary key field that identifies unique combinations of alleles.

• Strain typing
  • MLST
  • Finetyping antigens
• Capsule
  • Capsule null (cnl)
    • Capsule Null (cnl)
  • Capsule Region A
    • Capsule Region A - Serogroup A
    • Capsule Region A - Serogroup B
    • Capsule Region A - Serogroup C
    • Capsule Region A - Serogroup E
    • Capsule Region A - Serogroup H
    • Capsule Region A - Serogroup L
    • Capsule Region A - Serogroup W
    • Capsule Region A - Serogroup X
    • Capsule Region A - Serogroup Y
    • Capsule Region A - Serogroup Z
    • Commensal cps: Group 1
    • Commensal cps: Group 2
    • Commensal cps: Group 3
  • Capsule Region B
    • Capsule Region B
  • Capsule Region C
    • Capsule Region C
  • Capsule Region D and D'
    • Capsule Region D and D'
• Genetic Information Processing
  • Replication and Repair
    • DNA replication
    • Nucleotide excision repair
  • Transcription
    • RNA polymerase
  • Translation
    • Ribosomal protein genes
    • tRNA molecules
• Genomic islands
  • Gonococcal Genetic Island
  • VirB T4SS
  • Maf toxin/anti-toxin system
    • MGI-1
    • MGI-2
    • MGI-3
• Lineage Schemes
  • L3 cgMLST
  • Lineage 44
    • L44 cgMLST
    • L44 pgMLST
• Metabolism
  • Carbohydrate Metabolism
    • Glycolysis
    • Pyruvate dehydrogenase complex
    • TCA cycle
  • Glycan Biosynthesis and Metabolism
    • LOS Biosynthesis
      • ADP-heptose biosynthesis
      • Kdo addition
      • Lipid A biosynthesis: acyltransferases
      • Lipid A biosynthesis: other
      • LOS alpha chain transferases
      • LOS inner core transferases
      • LOS transport/export
      • UDP-GlcNAc synthesis
      • UDP-glucose and UDP-galactose biosynthesis
  • Nucleotide Metabolism
    • Purine metabolism
    • Pyrimidine metabolism
• N. gonorrhoeae AMR
  • N. gonorrhoeae Beta-lactam AMR
  • N. gonorrhoeae Efflux Pumps AMR
  • N. gonorrhoeae Fluoroquinolone AMR
  • N. gonorrhoeae Macrolides AMR
  • N. gonorrhoeae plasmid mediated AMR
  • NG STAR
• Peptidoglycan Biosynthesis
  • PenA locus
  • Peptidoglycan pathway
• Plasmids
  • beta lactamase plasmid
  • Conjugative Plasmid
  • Cryptic Plasmid
• Restriction Modification Systems
  • Other RMS
  • RMS in Neisseria gonorrhoeae
• Typing
  • MLST
  • Finetyping antigens
  • rplF species
  • Antigen genes
  • Bexsero Antigen Sequence Typing (BAST)
  • eMLST (20 locus partial genes)
  • eMLST (20 locus whole genes)
  • Human-restricted Neisseria cgMLST v1.0
  • NG MAST v2.0
  • N. gonorrhoeae cgMLST v1.0
  • N. meningitidis cgMLST v1
  • N. meningitidis cgMLST v2
  • OMV peptide typing
  • PorB_loop_peptides
  • N. gonorrhoeae Typing
    • NG MAST v2.0
    • N. gonorrhoeae agMLST v1.0
    • N. gonorrhoeae cgMLST v1.0
    • N. gonorrhoeae pgMLST v1.0
    • Ng_pblaST
• Other schemes
  • Antibiotic resistance
  • Factor H binding protein
  • GC OMV peptide typing
  • Iron acquisition
  • Mendevar
  • Methylases
  • NadA
  • Neisseria Heparin Binding Antigen (NHBA)
  • OMV peptide
  • Pilus genes
  • Protein glycosylation
  • Secreted peptides
  • Small regulatory RNAs

Loci

3090 loci defined.