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Clinical identification

This query will determine a strain type (PorA VRs, FetA VR, ST and clonal complex) from a pasted in genome. If penA or rpoB sequences are present, these will also be identified and an indication of the penicillin and rifampicin resistance will be provided (if possible). This indication is based on values deposited in the PubMLST isolate database.

Analysis will take about a minute for a whole genome.

Please note that if you just want to extract MLST results, then it is much quicker to use the standard query form.

Enter query sequence (single or multiple contigs up to whole genome in size)
Alternatively upload FASTA file Select FASTA file:
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