Database status: Neisseria isolates

Isolates

Total: 70,008
Last updated: 2020-08-10

Update history

Schemes

Schemes are collections of loci. They may be indexed, in which case they have a primary key field that identifies unique combinations of alleles.

Capsule
- Capsule Null (cnl)
- Capsule Region A
- Capsule Region B
  - Capsule Region B
- Capsule Region C
  - Capsule Region C
- Capsule Region D and D'
  - Capsule Region D and D'
Genetic Information Processing
- Aminotransferase (transaminase)
  - Class I
  - Class II
  - Class III
  - Class IV
  - Class V
- DNA Replication
  - DNA topoisomerases
    - Topoisomerases
    - Topoisomerase subunits
  - Elongation factors
  - Initiation Factors
    - Initiation factors
  - Termination Factors
    - DNA methylation enzyme
    - Prevention of re-replication factors
- Transcription
  - Transcription factors
    - Helix-turn-helix
    - Other transcription factors
      - Others
  - Transcription machinery
    - Other transcription-related factors
    - RNA polymerase
      - Core subunits
      - Sigma factors
- Translation
  - Ribosomal protein genes
  - transfer RNA Biogenesis
    - 3' processing and CCA adding factors
      - 3' processing factors
      - CCA adding factor
    - 5' processing factors
      - Ribonuclease P
    - Aminoacyl-tRNA synthetases (AARSs)
      - Multi-aminoacyl-tRNA synthetase complex (MSC)
      - Other AARSs
    - tRNA modification factors
Genomic islands
- Gonococcal Genetic Island
- VirB T4SS
- Maf toxin/anti-toxin system
  - MGI-1
  - MGI-2
  - MGI-3
Lineage Schemes
- Lineage 23
  - L23 cgMLST
  - L23 pgMLST
- Lineage 4821
  - L4821 cgMLST
  - L4821 pgMLST
- Lineage 5
  - L5 cgMLST
  - L5 pgMLST
Metabolism
- Carbohydrate Metabolism
- Glycan Biosynthesis and Metabolism
  - LOS Biosynthesis
- Nucleotide Metabolism
  - Purine metabolism
  - Pyrimidine metabolism
N. gonorrhoeae AMR
Pilin
- Pilus genes
Plasmids
Typing
Other schemes

Loci

3061 loci defined.

Database status: Neisseria isolates

Isolates

Schemes

Loci

Fields