Database status

Isolates

Total

71,560

Last updated

2020-10-22

• Update history

Schemes

Schemes are collections of loci. They may be indexed, in which case they have a primary key field that identifies unique combinations of alleles.

• Capsule
  • Capsule Null (cnl)
  • Capsule Region A
    • Capsule Region A - Serogroup A
    • Capsule Region A - Serogroup B
    • Capsule Region A - Serogroup C
    • Capsule Region A - Serogroup E
    • Capsule Region A - Serogroup H
    • Capsule Region A - Serogroup L
    • Capsule Region A - Serogroup W
    • Capsule Region A - Serogroup X
    • Capsule Region A - Serogroup Y
    • Capsule Region A - Serogroup Z
    • Commensal cps: Group 1
    • Commensal cps: Group 2
    • Commensal cps: Group 3
  • Capsule Region B
    • Capsule Region B
  • Capsule Region C
    • Capsule Region C
  • Capsule Region D and D'
    • Capsule Region D and D'
• Genetic Information Processing
  • Aminotransferase (transaminase)
    • Class I
    • Class II
    • Class III
    • Class IV
    • Class V
  • DNA Replication
    • DNA topoisomerases
      • Topoisomerases
      • Topoisomerase subunits
    • Elongation factors
      • DNA polymerase III holoenzyme
      • Other elongation factors
      • RNase H
    • Initiation Factors
      • Initiation factors
    • Termination Factors
      • DNA methylation enzyme
      • Prevention of re-replication factors
  • Transcription
    • Transcription factors
      • Helix-turn-helix
        • CRP/FNR family
        • DeoR family
        • Fur family
        • GntR family
        • Lrp/AsnC family
        • LysR family
        • Other families
        • Rrf2 family
        • TetR/AcrR family
      • Other transcription factors
        • Others
    • Transcription machinery
      • Other transcription-related factors
        • RNA polymerase-associated proteins
        • Transcription elongation factors
        • Transcription termination factor
      • RNA polymerase
        • Core subunits
        • Sigma factors
  • Translation
    • Ribosomal protein genes
    • transfer RNA Biogenesis
      • 3' processing and CCA adding factors
        • 3' processing factors
        • CCA adding factor
      • 5' processing factors
        • Ribonuclease P
      • Aminoacyl-tRNA synthetases (AARSs)
        • Multi-aminoacyl-tRNA synthetase complex (MSC)
        • Other AARSs
      • tRNA modification factors
        • Deaminase
        • Dihydorouridine synthases
        • Methylthiotransferase
        • Other tRNA modification factors
        • Psudouridine synthases
        • Thiolation factors
        • tRNA degradation factors
• Genomic islands
  • Gonococcal Genetic Island
  • VirB T4SS
  • Maf toxin/anti-toxin system
    • MGI-1
    • MGI-2
    • MGI-3
• Lineage Schemes
  • Lineage 23
    • L23 cgMLST
    • L23 pgMLST
  • Lineage 4821
    • L4821 cgMLST
    • L4821 pgMLST
  • Lineage 5
    • L5 cgMLST
    • L5 pgMLST
• Metabolism
  • Carbohydrate Metabolism
    • Glycolysis
    • Pyruvate dehydrogenase complex
    • TCA cycle
  • Glycan Biosynthesis and Metabolism
    • LOS Biosynthesis
      • ADP-heptose biosynthesis
      • Kdo addition
      • Lipid A biosynthesis: acyltransferases
      • Lipid A biosynthesis: other
      • LOS alpha chain transferases
      • LOS inner core transferases
      • LOS transport/export
      • UDP-GlcNAc synthesis
      • UDP-glucose and UDP-galactose biosynthesis
  • Nucleotide Metabolism
    • Purine metabolism
    • Pyrimidine metabolism
• N. gonorrhoeae AMR
  • N. gonorrhoeae Beta-lactam AMR
  • N. gonorrhoeae Efflux Pumps AMR
  • N. gonorrhoeae Fluoroquinolone AMR
  • N. gonorrhoeae Macrolides AMR
  • N. gonorrhoeae plasmid mediated AMR
  • NG STAR
• Pilin
  • Pilus genes
• Plasmids
  • beta lactamase plasmid
  • Conjugative Plasmid
  • Cryptic Plasmid
• Typing
  • MLST
  • Finetyping antigens
  • 16S
  • Antigen genes
  • Bexsero Antigen Sequence Typing (BAST)
  • eMLST (20 locus partial genes)
  • eMLST (20 locus whole genes)
  • Human-restricted Neisseria cgMLST v1.0
  • NG MAST
  • N. gonorrhoeae cgMLST v1.0
  • N. meningitidis cgMLST v1.0
  • OMV peptide typing
  • Ribosomal MLST
  • rplF species
• Other schemes
  • Antibiotic resistance
  • DNA replication
  • DNA replication
  • Factor H-binding protein
  • GC OMV peptide typing
  • Iron acquisition
  • L3 cgMLST
  • Methyltransferases
  • Neisseria genus core genes
  • Nucleotide excision repair
  • OMV peptide
  • Protein glycosylation
  • Small regulatory RNAs
  • tRNA molecules

Loci

3061 loci defined.

Fields

• Field description
• Defined field values