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1,575

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1,575 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields								MLST		Finetyping antigens
id	isolate	aliases	country	year	disease	species	capsule group	ST	clonal complex	PorA_VR1	PorA_VR2	FetA_VR
2281	M7089		USA	2000	invasive (unspecified/other)	Neisseria meningitidis	W	11	ST-11 complex	5	2	F1-1
2290	M7124		Saudi Arabia	2000	invasive (unspecified/other)	Neisseria meningitidis	W	11	ST-11 complex	5	2	F1-1
17191	18581		Madagascar	2001	invasive (unspecified/other)	Neisseria meningitidis	W	11	ST-11 complex	5	2	F1-1
17192	19121		Madagascar	2001	invasive (unspecified/other)	Neisseria meningitidis	W	11	ST-11 complex	5	2	F1-1
17193	19226		Madagascar	2001		Neisseria meningitidis	W	11	ST-11 complex	5	2	F1-1
17194	19650		Madagascar	2002	invasive (unspecified/other)	Neisseria meningitidis	discrepancy	13259	ST-11 complex	5	2	F1-1
17195	19678		Madagascar	2002		Neisseria meningitidis	W	11	ST-11 complex	5	2	F1-1
17196	19679		Madagascar	2002		Neisseria meningitidis	W	11	ST-11 complex	5	2	F1-1
17197	19680		Madagascar	2002		Neisseria meningitidis	W	11	ST-11 complex	5	2	F1-1
19957	M00 241317		UK	2000	invasive (unspecified/other)	Neisseria meningitidis	W	11	ST-11 complex	5	2	F1-1
20424	M11 240389		UK [England]	2011	invasive (unspecified/other)	Neisseria meningitidis	W	11	ST-11 complex	5	2	F1-1
21573	SA_serogroup W_NM1	9832_1#19	South Africa	2008	septicaemia	Neisseria meningitidis	W	11	ST-11 complex	5	2	F1-1
21578	SA_serogroup W_NM6	9832_1#24	South Africa	2004	septicaemia	Neisseria meningitidis	W	11	ST-11 complex	5	2	F1-1
21582	SA_serogroup W_NM10	9832_1#28	South Africa	2010	meningitis	Neisseria meningitidis	W	11	ST-11 complex	5	2	F1-1
21583	SA_serogroup W_NM11	9832_1#29	South Africa	2011	meningitis	Neisseria meningitidis	W	11	ST-11 complex	5	2	F1-1
21584	SA_serogroup W_NM12	9832_1#30	South Africa	2006	septicaemia	Neisseria meningitidis	W	11	ST-11 complex	5	2	F1-1
21588	SA_serogroup W_NM16	9832_1#34	South Africa	2005	meningitis and septicaemia	Neisseria meningitidis	W	11	ST-11 complex	5	2	F1-1
29313	39319		South Africa	2013	meningitis	Neisseria meningitidis	W	11	ST-11 complex	5	2	F3-27
29314	39619		South Africa	2013	invasive (unspecified/other)	Neisseria meningitidis	W	11	ST-11 complex	5	2	F1-1
29316	13283		South Africa	2004	meningitis	Neisseria meningitidis	W	11	ST-11 complex	5	2	F1-1
29317	20033		South Africa	2008	invasive (unspecified/other)	Neisseria meningitidis	W	11	ST-11 complex	5	2	F1-1
29318	40328		South Africa	2013	invasive (unspecified/other)	Neisseria meningitidis	W	11	ST-11 complex	5	2	F3-27
29320	5453		South Africa	2006	meningitis	Neisseria meningitidis	W	11	ST-11 complex	5	2	F1-1
29321	14493		South Africa	2007	invasive (unspecified/other)	Neisseria meningitidis	W	11	ST-11 complex	5	2	F1-1
29322	12198		South Africa	2007	invasive (unspecified/other)	Neisseria meningitidis	W	11	ST-11 complex	5	2	F1-1

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Abrams et al. 2015 Genome Announc 3:
Achtman et al. 2001 Emerg Infect Dis 7:420-7
Al Suwayyid et al. 2018 BMC Genomics 19:165
Al Suwayyid et al. 2023 Microb Genom 9:
Alfsnes et al. 2020 Microb Genom 6:
Ang et al. 2016 Indian J Microbiol 56:225-7
Anselmo et al. 2015 Genome Announc 3:
Banhart et al. 2021 J Infect Dis 224:1398-1404
Bart et al. 1998 J Clin Microbiol 36:1746-9
Bart et al. 1999 Infect Immun 67:3842-6
Batty et al. 2020 Int J Infect Dis 95:198-203
Bazan et al. 2017 Clin Infect Dis 65:92-99
Bennett et al. 2005 Infect Immun 73:2424-32
Bennett et al. 2007 BMC Biol 5:35
Bennett et al. 2010 BMC Genomics 11:652
Bennett et al. 2012 Microbiology 158:1570-80
Bennett et al. 2013 Int J Syst Evol Microbiol 63:3920-6
Bentley et al. 2007 PLoS Genet 3:e23
Berenger et al. 2019 Emerg Infect Dis 25:1660-1667
Berger 1971 Z Med Mikrobiol Immunol 156:154-8
Berger 1985 Eur J Clin Microbiol 4:431-3
Bettencourt et al. 2022 Eur J Clin Microbiol Infect Dis 41:289-298
Bettencourt et al. 2022 Vaccine 40:4772-4779
Bos et al. 2005 Infect Immun 73:6194-7
Bratcher et al. 2014 BMC Genomics 15:1138
Bratcher et al. 2018 Euro Surveill 23:
Brehony et al. 2016 Vaccine 34:4690-7
Brik et al. 2020 Int J Infect Dis 91:73-78
Brynildsrud et al. 2018 Proc Natl Acad Sci U S A 115:5510-5515
Bucci et al. 1999 Mol Cell 3:435-45
Buckee et al. 2008 Proc Natl Acad Sci U S A 105:15082-7
Buckley et al. 2018 Sci Rep 8:1503
Budroni et al. 2011 Proc Natl Acad Sci U S A 108:4494-9
Bukovski et al. 2016 J Med Microbiol 65:1013-9
Carifo et al. 1973 Appl Microbiol 26:223-30
Catlin 1973 J Infect Dis 128:178-94
Caugant et al. 1990 J Infect Dis 162:867-74
Cayrou et al. 2018 PLoS One 13:e0197186
Cehovin et al. 2018 J Infect Dis 218:801-808
Cehovin et al. 2020 J Infect Dis 222:1826-1836
Ceyhan et al. 2020 Vaccine 38:3545-3552
Chen et al. 2011 J Bacteriol 193:1788-9
Chen et al. 2020 Antimicrob Agents Chemother 64:
Chen et al. 2021 Emerg Infect Dis 27:1110-1122
Chen et al. 2023 Emerg Infect Dis 29:341-350
Cherdtrakulkiat et al. 2020 Microbiol Resour Announc 9:
Chiou et al. 2022 Microbiol Spectr 10:e0088222
Chung et al. 2008 J Bacteriol 190:6035-6
Claus et al. 2005 J Infect Dis 191:1263-71
Costa-Lourenço et al. 2017 Infect Genet Evol 58:157-163
Crowe et al. 1989 J Infect Dis 159:686-700
Dallman et al. 2015 Epidemiol Infect 143:1672-80
de Curraize et al. 2016 Antimicrob Agents Chemother 60:6962-6964
de Filippis et al. 2005 Diagn Microbiol Infect Dis 53:161-7
de Korne-Elenbaas et al. 2021 J Antimicrob Chemother 76:1759-1768
de Korne-Elenbaas et al. 2022 Microbiol Spectr 10:e0031322
De Silva et al. 2016 Lancet Infect Dis 16:1295-1303
Deghmane et al. 2020 J Infect 80:519-526
Demczuk et al. 2015 J Clin Microbiol 53:191-200
Demczuk et al. 2016 J Clin Microbiol 54:1304-13
Dempsey et al. 1995 J Bacteriol 177:6390-400
Diallo et al. 2017 BMC Genomics 18:398
Diallo et al. 2019 Sci Rep 9:13742
Didelot et al. 2009 Microbiology 155:3176-86
Didelot et al. 2016 MBio 7:
Earle et al. 2021 PLoS Pathog 17:e1009992
Ezewudo et al. 2015 PeerJ 3:e806
Fazio et al. 2019 Euro Surveill 24:
Feagins et al. 2022 Microbiol Spectr 10:e0192321
Feavers et al. 1999 J Clin Microbiol 37:3883-7
Ferreira et al. 2013 Sex Transm Dis 40:469-72
Fifer et al. 2018 Lancet Infect Dis 18:573-581
Fletcher et al. 2004 Infect Immun 72:2088-100
Freudenburg-de Graaf et al. 2020 Vaccine 38:7850-7857
Ganesh et al. 2017 BMC Microbiol 17:40
Gianecini et al. 2019 J Antimicrob Chemother 74:1551-1559
Golparian et al. 2018 Euro Surveill 23:
Golparian et al. 2020 BMC Genomics 21:116
Golparian et al. 2020 J Antimicrob Chemother 75:3163-3172
Golparian et al. 2022 J Antimicrob Chemother 77:2171-2182
Gorringe et al. 2009 Clin Vaccine Immunol 16:1113-20
Grad et al. 2014 Lancet Infect Dis 14:220-6
Grad et al. 2016 J Infect Dis 214:1579-1587
Green et al. 2019 J Infect Dis 220:1109-1117
Guiddir et al. 2018 Clin Infect Dis 67:1220-1227
Guo et al. 2018 Emerg Infect Dis 24:683-690
Hadad et al. 2021 Front Microbiol 12:820998
Han et al. 2006 J Clin Microbiol 44:474-9
Hao et al. 2011 Genome Biol Evol 3:1406-18
Harris et al. 2018 Lancet Infect Dis 18:758-768
Harrison et al. 2015 EBioMedicine 2:234-243
Harrison et al. 2015 J Infect Dis 211:1761-8
Harrison et al. 2017 Sex Transm Infect 93:445-451
Harrison et al. 2020 J Infect Dis 222:1816-1825
Hess et al. 2012 Antimicrob Agents Chemother 56:5633-41
Hill et al. 2015 Lancet Infect Dis 15:1420-8
Hoang et al. 2005 Clin Infect Dis 40:e38-42
Holmes et al. 1993 Int J Syst Bacteriol 43:687-93
Holmes et al. 2020 Front Genet 11:579411
Hong et al. 2013 Antimicrob Agents Chemother 57:1961-4
Hong et al. 2018 Antimicrob Agents Chemother 62:
Hong et al. 2018 J Infect 76:149-158
Hong et al. 2021 Hum Vaccin Immunother 17:5614-5622
Honskus et al. 2018 PLoS One 13:e0199652
Honskus et al. 2021 Epidemiol Mikrobiol Imunol 70:168-177
Honskus et al. 2022 PLoS One 17:e0265066
Honskus et al. 2023 PLoS One 18:e0282971
Itsko et al. 2020 J Clin Microbiol 58:e01780-20
Itsko et al. 2022 J Infect Dis 226:729-737
Jamoralin et al. 2021 Western Pac Surveill Response J 12:17-25
Jen et al. 2021 Microbiol Resour Announc 10:e0078821
John et al. 2012 Infect Immun 80:4014-26
Jolley et al. 2000 J Clin Microbiol 38:4492-8
Jolley et al. 2004 BMC Microbiol 4:34
Jolley et al. 2005 Mol Biol Evol 22:562-9
Jolley et al. 2012 J Clin Microbiol 50:3046-53
Joseph et al. 2010 J Bacteriol 192:5363-77
Juscamayta-López et al. 2021 J Med Microbiol 70:
Kakooza et al. 2023 J Antimicrob Chemother 78:1982-1991
Kalmusova et al. 2000 New Microbiol 23:185-200
Katz et al. 2011 J Bacteriol 193:3633-41
Kesanopoulos et al. 2018 PLoS One 13:e0209919
Kilic et al. 2006 J Clin Microbiol 44:222-4
Kislyuk et al. 2010 Bioinformatics 26:1819-26
Kivata et al. 2019 BMC Microbiol 19:76
Kivata et al. 2020 BMC Infect Dis 20:703
Klughammer et al. 2017 PLoS One 12:e0169892
Koroleva et al. 1998 Clin Microbiol Infect 4:123-128
Krauland et al. 2012 PLoS One 7:e35699
Kremer et al. 2020 Front Med (Lausanne) 7:594769
Kremer et al. 2020 Microb Genom 6:mgen000422
Kretz et al. 2016 Emerg Infect Dis 22:1762-1768
Kriz et al. 2000 Eur J Clin Microbiol Infect Dis 19:452-9
Krizova et al. 2019 PLoS One 14:e0219477
Kwambana-Adams et al. 2022 Int J Mol Sci 23:
Kwong et al. 2018 Sex Transm Infect 94:151-157
Křížová et al. 2018 Epidemiol Mikrobiol Imunol 67:64-73
Lamelas et al. 2014 MBio 5:e01974-14
Lamelas et al. 2017 Microb Genom 3:e000120
Lan et al. 2020 J Antimicrob Chemother 75:1432-1438
Lavezzo et al. 2010 J Bacteriol 192:5270-1
Lee et al. 2018 J Antimicrob Chemother 73:353-364
Lee et al. 2019 J Antimicrob Chemother 74:1812-1819
Lees et al. 2017 Microb Genom 3:e000103
Lemos et al. 2022 J Med Microbiol 71:
Leo et al. 2020 Vaccine 38:5324-5331
Li et al. 2019 J Infect 79:612-625
Lo Presti et al. 2019 J Clin Microbiol 58:
Lo Presti et al. 2020 Infect Genet Evol 84:104360
Lucidarme et al. 2015 J Infect 71:544-52
Lucidarme et al. 2017 J Infect 75:95-103
MacLennan et al. 2021 Lancet Infect Dis 21:677-687
Maduna et al. 2020 Antimicrob Agents Chemother 64:
Maiden et al. 1998 Proc Natl Acad Sci U S A 95:3140-5
Marri et al. 2010 PLoS One 5:e11835
Martin et al. 1998 J Infect Dis 177:497-500
Mauffrey et al. 2023 Microbiol Resour Announc 12:e0105622
Maynard-Smith et al. 2022 J Infect Dis 226:2204-2214
Mbaeyi et al. 2020 Lancet Infect Dis 20:1418-1425
McClure et al. 2015 PLoS One 10:e0133982
Mitchev et al. 2021 Microbiol Resour Announc 10:
Miyake et al. 2020 Microbiol Resour Announc 9:
Moreno et al. 2020 PLoS One 15:e0234475
Mortimer et al. 2021 Clin Infect Dis 73:e3146-e3155
Moura et al. 2018 Int J Med Microbiol 308:454-458
Mulhall et al. 2016 J Clin Microbiol 54:2891-2899
Mulhall et al. 2018 mSphere 3:
Mulhall et al. 2019 PLoS One 14:e0216771
Mullally et al. 2021 Microb Genom 7:
Murphy et al. 2021 Microbiol Resour Announc 10:
Mustapha et al. 2021 J Infect Dis 223:2038-2047
Neri et al. 2014 Genome Announc 2:
Neri et al. 2022 Sex Transm Infect 98:420-426
Njanpop-Lafourcade et al. 2005 Microbes Infect 7:645-9
Oldfield et al. 2016 J Infect Dis 213:1777-85
Oldfield et al. 2018 J Infect Dis 217:608-616
Oliver et al. 2002 Infect Immun 70:3621-6
Omer et al. 2011 PLoS One 6:e17145
Padovese et al. 2022 Int J STD AIDS 33:933-935
Pan et al. 2014 Int J Infect Dis 29C:62-64
Pandey et al. 2017 Stand Genomic Sci 12:41
Parent du Chatelet et al. 2017 J Infect 74:564-574
Parkhill et al. 2000 Nature 404:502-6
Peng et al. 2008 Genomics 91:78-87
Peng et al. 2019 EClinicalMedicine 7:47-54
Perry et al. 1987 J Gen Microbiol 133:1409-18
Piet et al. 2011 J Bacteriol 193:2371-2
Piet et al. 2014 J Infect 69:352-7
Pinto et al. 2020 Sex Transm Dis 47:e54-e56
Pinto et al. 2021 Microb Genom 7:
Popovic et al. 2001 J Clin Microbiol 39:75-85
Potts et al. 2021 Clin Infect Dis 73:1185-1193
Pérez-Trallero et al. 2002 Lancet 360:953
Razki et al. 2018 J Clin Microbiol 56:
Ren et al. 2017 mSystems 2:
Retchless et al. 2021 PLoS Pathog 17:e1009586
Retchless et al. 2022 J Clin Microbiol 60:e0173221
Roach et al. 2015 PLoS Genet 11:e1005413
Rodrigues et al. 2018 Emerg Infect Dis 24:673-682
Rodrigues et al. 2018 Wellcome Open Res 3:151
Rusniok et al. 2009 Genome Biol 10:R110
Russell et al. 2008 Microbiology 154:1170-7
Ryan et al. 2018 Eur J Clin Microbiol Infect Dis 37:1661-1672
Sacchi et al. 1998 Clin Diagn Lab Immunol 5:845-55
Salmerón et al. 2021 J Antimicrob Chemother 76:930-935
Santos et al. 2022 Mem Inst Oswaldo Cruz 117:e220118
Schmerer et al. 2020 Antimicrob Agents Chemother 64:
Schoen et al. 2008 Proc Natl Acad Sci U S A 105:3473-8
Schoen et al. 2011 J Bacteriol 193:2064-5
Seib et al. 2015 Nucleic Acids Res 43:4150-62
Shao et al. 2022 Antimicrob Agents Chemother 66:e0238321
Shaskolskiy et al. 2022 Int J Mol Sci 23:
Shevtsov et al. 2022 PLoS One 17:e0279536
Sneath et al. 1996 Lett Appl Microbiol 23:355-8
Spinsanti et al. 2021 PLoS Pathog 17:e1009461
Stabler et al. 2005 Microbiology 151:2907-22
Stefanelli et al. 2016 J Infect 73:136-44
Stefanelli et al. 2019 Clin Microbiol Infect 25:111.e1-111.e4
Stein et al. 2011 PLoS One 6:e18923
Stenmark et al. 2020 Sci Rep 10:3644
Straub et al. 2021 Microb Genom 7:
Sánchez-Busó et al. 2019 Nat Microbiol 4:1941-1950
Sánchez-Busó et al. 2019 Sci Rep 9:14685
Sánchez-Busó et al. 2022 Lancet Microbe 3:e452-e463
Säll et al. 2020 Vaccine 38:4374-4378
Taha et al. 2001 Infect Immun 69:1971-3
Taha et al. 2004 J Clin Microbiol 42:4158-63
Taha et al. 2007 Antimicrob Agents Chemother 51:2784-92
Taha et al. 2010 Antimicrob Agents Chemother 54:3651-8
Taha et al. 2016 PLoS One 11:e0154047
Takahashi et al. 2023 Vaccine 41:416-426
Takei et al. 2018 Jpn J Infect Dis 71:244-246
Tettelin et al. 2000 Science 287:1809-15
Thangarajah et al. 2020 Clin Infect Dis 70:1761-1763
Thomas et al. 2019 J Infect Dis 220:294-305
Thompson et al. 2003 Microbiology 149:1849-58
Topaz et al. 2019 EBioMedicine 41:488-496
Topaz et al. 2020 Microb Genom 6:
Town et al. 2020 Emerg Infect Dis 26:505-515
Town et al. 2020 Lancet Infect Dis 20:478-486
Tsai et al. 1983 J Bacteriol 155:498-504
Tsang et al. 2018 Int J Infect Dis 69:55-62
Tsang et al. 2019 J Antimicrob Chemother 74:22-28
Tzanakaki et al. 2021 Vaccine 39:1621-1630
Tzeng et al. 2017 Proc Natl Acad Sci U S A 114:4237-4242
Törös et al. 2015 J Clin Microbiol 53:2154-62
Unemo et al. 2016 J Antimicrob Chemother 71:3096-3108
Urwin et al. 2004 Infect Immun 72:5955-62
Vandamme et al. 2006 Int J Syst Evol Microbiol 56:1801-5
Vaughan et al. 2006 Vaccine 24:5277-93
Veyrier et al. 2013 Genome Announc 1:
Vogel et al. 1998 J Clin Microbiol 36:2465-70
Wanford et al. 2020 Microb Genom 6:
Wang et al. 1992 Infect Immun 60:5267-82
Wang et al. 1993 J Infect Dis 167:1320-9
Wang et al. 2020 J Antimicrob Chemother 75:2495-2498
Wang et al. 2021 Vaccine 39:4261-4265
Watkins et al. 2017 Sci Rep 7:41126
Whiley et al. 2018 Lancet Infect Dis 18:717-718
White et al. 2019 Microbiol Resour Announc 8:
Willerton et al. 2020 J Infect 81:575-584
Williamson et al. 2019 Nat Commun 10:3988
Wolfgang et al. 2013 Int J Syst Evol Microbiol 63:1323-8
Xia et al. 2022 Biomed Environ Sci 35:151-154
Yahara et al. 2018 Microb Genom 4:
Yahara et al. 2021 Genome Med 13:51
Yang et al. 2021 Emerg Infect Dis 27:1087-1097
Yazdankhah et al. 2004 J Clin Microbiol 42:5146-53
Yuan et al. 2019 Emerg Microbes Infect 8:1546-1549
Zhang et al. 2014 Genome Announc 2:
Zhang et al. 2021 Front Microbiol 12:801196
Zondag et al. 2023 Microb Genom 9: