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Genome Comparator - Neisseria isolates

Selecting 'All loci' will produce an artefactual analysis because this database contains different kinds of loci that are not equivalent (complete genes, MLST fragments, peptide variable regions, intergenic regions etc.). You are advised to select one of the recommended schemes.

Please select the required isolate ids and loci for comparison - use CTRL or SHIFT to make multiple selections in list boxes. In addition to selecting individual loci, you can choose to include all loci defined in schemes by selecting the appropriate scheme description. Alternatively, you can enter the accession number for an annotated reference genome and compare using the loci defined in that.

Isolates
User genomes

Optionally include data not in the
database.

Upload assembly FASTA file
(or zip file containing multiple
FASTA files - one per genome):

Loci
Include in identifiers
Schemes
Annotated reference genome Enter accession number:

or choose annotated genome:

or upload Genbank/EMBL/FASTA file:
Parameters / options
Distance matrix calculation With incomplete loci:



Alignments
  • Aligner:
Core genome analysis
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