Full information on isolate NmissMEN10 (id:61167)
Projects
This isolate is a member of the following project:
- GMGL
- Global Meningitis Genome Library: curated isolate data sets of N. meningtidis causing meningitis and/or septicaemia
Provenance/primary metadata
- id
- 61167
- isolate
- NmissMEN10
- strain designation
- B: P1.7-2,13-1: F1-88: ST-1103 (cc41/44)
- country
- Italy
- continent
- Europe
- year
- 2016
- disease
- carrier
- species
- Neisseria meningitidis
- genogroup
- B
- genogroup notes
- B backbone: All essential capsule genes intact and present. Prediction code: https://github.com/ntopaz/characterize_neisseria_capsule.
- capsule group
- B
- type strain
- 0
Tracking
- sender
- Paola Vacca, Istituto Superiore di Sanità , Rome Italy
- curator
- Auto Tagger
- update history
- 32 updates show details
- date entered
- 2018-06-18
- datestamp
- 2023-07-10
Secondary metadata
Publication (1)
- Neri A, Palmieri A, Prignano G, Giuliani M, Latini A, Fazio C, Vacca P, Ambrosio L, Ciammaruconi A, Fillo S, Anselmo A, Fortunato A, Lista R, Stefanelli P (2022). Molecular characterisation and antibiotic susceptibility of meningococcal isolates from healthy men who have sex with men. Sex Transm Infect 98:420-426
Sequence bin
- contigs
- 166
- total length
- 2,072,233 bp
- max length
- 119,405 bp
- mean length
- 12,484 bp
- N50
- 24,403
- L50
- 26
- N90
- 6,816
- L90
- 85
- N95
- 4,328
- L95
- 104
- %GC
- 51.82
- Ns
- 0
- gaps
- 0
- loci tagged
- 2,091
Annotation quality metrics
Provenance information
Missing field values for: age_range, source
Scheme completion
Scheme | Scheme loci | Designated loci | Annotation | |
---|---|---|---|---|
Score | Status | |||
rplF species | 1 | 1 | 100 | |
Finetyping antigens | 3 | 3 | 100 | |
Bexsero Antigen Sequence Typing (BAST) | 5 | 5 | 100 | |
MLST | 7 | 7 | 100 | |
Ribosomal MLST | 53 | 53 | 100 | |
N. meningitidis cgMLST v2 | 1422 | 1385 | 97 |
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
---|---|---|---|---|---|
Bact_rmlstc_5 | Ribosomal MLST | Single-linkage | 5 | experimental | 698 (4096 isolates) |
Bact_rmlstc_4 | Ribosomal MLST | Single-linkage | 4 | experimental | 4661 (10 isolates) |
Bact_rmlstc_3 | Ribosomal MLST | Single-linkage | 3 | experimental | 5401 (10 isolates) |
Bact_rmlstc_5 | Ribosomal MLST | Single-linkage | 5 | experimental | 698 (4096 isolates) |
Bact_rmlstc_4 | Ribosomal MLST | Single-linkage | 4 | experimental | 4661 (10 isolates) |
Bact_rmlstc_3 | Ribosomal MLST | Single-linkage | 3 | experimental | 5401 (10 isolates) |
Bact_rmlstc_2 | Ribosomal MLST | Single-linkage | 2 | experimental | 44585 (1 isolate) |
Bact_rmlstc_1 | Ribosomal MLST | Single-linkage | 1 | experimental | 54952 (1 isolate) |
Schemes and loci
- All loci
- Capsule
- Genetic Information Processing
- Genomic islands
- Lineage Schemes
- Metabolism
- Peptidoglycan Biosynthesis
- Pilin
- Typing
- Other schemes
- Loci not in schemes
Navigate and select schemes within tree to display allele designations
Tools
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