Full information on isolate BM95a (id:1058)
Provenance/primary metadata
- id
- 1058
- isolate
- BM95a
- strain designation
- B: P1.7-2,13: F1-88: ST-187 ()
- alias
- GR-BM-95a_strC
- country
- Greece
- continent
- Europe
- town or city
- Athens
- year
- 1998
- age yr
- 27
- age range
- 25-44
- sex
- male
- disease
- carrier
- source
- throat swab
- epidemiology
- carrier
- species
- Neisseria meningitidis
- serogroup
- B
- genogroup
- B
- capsule group
- B
- serotype
- 15
- sero subtype
- P1.13
- comments
- MLEE: ET-S
Tracking
- bioproject accession
- PRJEB6398 www.ebi.ac.uk
- biosample accession
- SAMEA2570318; ERS470840 www.ebi.ac.uk
- ENA run accession
- ERR522809 www.ebi.ac.uk
- sender
- Georgina Tzanakaki, National Meningococcal Reference Laboratory, National School of Public Health, Athens, Greece
- curator
- James Bray, University of Oxford, UK (E-mail: james.bray@biology.ox.ac.uk)
- update history
- 145 updates show details
- date entered
- 2001-02-07
- datestamp
- 2023-06-07
Secondary metadata
Publication (1)
- Earle SG, Lobanovska M, Lavender H, Tang C, Exley RM, Ramos-Sevillano E, Browning DF, Kostiou V, Harrison OB, Bratcher HB, Varani G, Tang CM, Wilson DJ, Maiden MCJ (2021). Genome-wide association studies reveal the role of polymorphisms affecting factor H binding protein expression in host invasion by Neisseria meningitidis. PLoS Pathog 17:e1009992
Sequence bin
- contigs
- 182
- total length
- 2,173,667 bp
- max length
- 127,832 bp
- mean length
- 11,944 bp
- N50
- 45,792
- L50
- 17
- N90
- 10,599
- L90
- 54
- N95
- 5,840
- L95
- 67
- %GC
- 51.53
- Ns
- 0
- gaps
- 0
- loci tagged
- 2,197
Annotation quality metrics
Provenance information
Scheme completion
Scheme | Scheme loci | Designated loci | Annotation | |
---|---|---|---|---|
Score | Status | |||
rplF species | 1 | 1 | 100 | |
Finetyping antigens | 3 | 3 | 100 | |
Bexsero Antigen Sequence Typing (BAST) | 5 | 5 | 100 | |
MLST | 7 | 7 | 100 | |
Ribosomal MLST | 53 | 53 | 100 | |
N. meningitidis cgMLST v2 | 1422 | 1415 | 99 |
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
---|---|---|---|---|---|
Bact_rmlstc_5 | Ribosomal MLST | Single-linkage | 5 | experimental | 698 (3992 isolates) |
Bact_rmlstc_4 | Ribosomal MLST | Single-linkage | 4 | experimental | 4661 (9 isolates) |
Bact_rmlstc_3 | Ribosomal MLST | Single-linkage | 3 | experimental | 5401 (9 isolates) |
Bact_rmlstc_2 | Ribosomal MLST | Single-linkage | 2 | experimental | 6641 (8 isolates) |
Bact_rmlstc_1 | Ribosomal MLST | Single-linkage | 1 | experimental | 9400 (3 isolates) |
Nm_cgc_200 | N. meningitidis cgMLST v2 | Single-linkage | 200 | experimental | 94 (7 isolates) |
Nm_cgc_100 | N. meningitidis cgMLST v2 | Single-linkage | 100 | experimental | 142 (3 isolates) |
Nm_cgc_50 | N. meningitidis cgMLST v2 | Single-linkage | 50 | experimental | 157 (3 isolates) |
Nm_cgc_25 | N. meningitidis cgMLST v2 | Single-linkage | 25 | experimental | 161 (3 isolates) |
Nm_cgc_10 | N. meningitidis cgMLST v2 | Single-linkage | 10 | experimental | 169 (3 isolates) |
Bact_rmlstc_5 | Ribosomal MLST | Single-linkage | 5 | experimental | 698 (3992 isolates) |
Bact_rmlstc_4 | Ribosomal MLST | Single-linkage | 4 | experimental | 4661 (9 isolates) |
Bact_rmlstc_3 | Ribosomal MLST | Single-linkage | 3 | experimental | 5401 (9 isolates) |
Bact_rmlstc_2 | Ribosomal MLST | Single-linkage | 2 | experimental | 6641 (8 isolates) |
Bact_rmlstc_1 | Ribosomal MLST | Single-linkage | 1 | experimental | 9400 (3 isolates) |
Nm_cgc_200 | N. meningitidis cgMLST v2 | Single-linkage | 200 | experimental | 94 (7 isolates) |
Nm_cgc_100 | N. meningitidis cgMLST v2 | Single-linkage | 100 | experimental | 142 (3 isolates) |
Nm_cgc_50 | N. meningitidis cgMLST v2 | Single-linkage | 50 | experimental | 157 (3 isolates) |
Nm_cgc_25 | N. meningitidis cgMLST v2 | Single-linkage | 25 | experimental | 161 (3 isolates) |
Nm_cgc_10 | N. meningitidis cgMLST v2 | Single-linkage | 10 | experimental | 169 (3 isolates) |
Schemes and loci
- All loci
- Capsule
- Genetic Information Processing
- Genomic islands
- Lineage Schemes
- Metabolism
- Peptidoglycan Biosynthesis
- Pilin
- Typing
- Other schemes
- Loci not in schemes
Navigate and select schemes within tree to display allele designations
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