PubMLST Database home Contents
Log in
Help

Sequence bin for LNP28998

Contig summary statistics

Contigs
23
Total length
1,890,960
Minimum length
344
Maximum length
573,298
Mean length
82,216
N50 contig number
3
N50 length (L50)
184,737
N90 contig number
9
N90 length (L90)
56,286
N95 contig number
11
N95 length (L95)
39,927

FASTAEMBLGBKGFF3

SequenceSequencing methodOriginal designationLengthCommentsLocusStartEndDirectionAnnotation
9806Illuminacontig_0001573298HAEM1858 78808521 EMBL GBK
HAEM1844 2468324940
HAEM1840 2765528020
HAEM1808 6389364564
HAEM1803 6735169996
HAEM1802 6998071230
HAEM1800 7423575704
HAEM1799 7572076280
HAEM1790 8903389392
HAEM1765 113872114159
HAEM1762 115458115808
HAEM1751 123457123951
HAEM1749 126789127403
HAEM1748 127447128841
HAEM1739 136852137532
HAEM1738 137756138196
HAEM1731 143702146461
pgi 160138160605
HAEM1414 172289172675
HAEM1421 178761179183
HAEM1481 183495184634
HAEM1626 198208198591
HAEM1625 198747199298
HAEM1624 199309199758
HAEM1622 201025201666
HAEM1614 207777208655
HAEM1613 209128209556
BACT000042 (rplM) 209128209556
BACT000009 (rpsI) 209573209965
HAEM1602 216993217151
HAEM1601 217298217516
HAEM1462 221866222135
BACT000015 (rpsO) 221866222135
HAEM1538 251390252214
HAEM1521 267701268705
HAEM1519 269745270593
HAEM1518 270603271370
HAEM1517 271447272142
HAEM1592 301858302787
HAEM1594 303907304545
BACT000049 (rplT) 316224316577
HAEM1454 316224316577
HAEM1453 316643316840
BACT000064 (rpmI) 316643316840
HAEM1439 330684331637
HAEM1651 356273357487
HAEM1653 358550358813
HAEM1145 393968395434
HAEM1144 395443396390
HAEM1143 396446397222
HAEM1142 397225397857
HAEM1141 397854399095
HAEM1140 399098400003
HAEM1139 400162400932
HAEM1374 460107461303
HAEM1355 484128484421
HAEM1354 484497484781
HAEM1353 484904486553
BACT000001 (rpsA) 484904486553
HAEM1782 487496488371
mdh 501543501947
HAEM0164 523924525186
HAEM0166 526087526566
HAEM0248 533918537256
HAEM0240 543789544349
HAEM0239 (tatA) 544353544580
HAEM0234 549107550021
9797Illuminacontig_0002284060HAEM0878 2691012 EMBL GBK
HAEM0882 40844296
BACT000060 (rpmE) 40844296
HAEM0884 55865858
HAEM0895 2865529836
HAEM0896 2985131194
HAEM0897 3119731862
HAEM0898 3187332526
HAEM0899 3277433679
BACT000010 (rpsJ) 3391434225
HAEM0900 3391434225
HAEM0901 3424234868
BACT000032 (rplC) 3424234868
BACT000033 (rplD) 3488435486
HAEM0902 3488435486
BACT000052 (rplW) 3548335782
HAEM0903 3548335782
BACT000031 (rplB) 3580036621
HAEM0904 3580036621
BACT000019 (rpsS) 3664736922
HAEM0905 3664736922
HAEM0906 3693437266
BACT000051 (rplV) 3693437266
HAEM0907 3728437991
BACT000003 (rpsC) 3728437991
HAEM0908 3800538415
BACT000045 (rplP) 3800538415
HAEM0909 3841538606
BACT000058 (rpmC) 3841538606
BACT000017 (rpsQ) 3860638863
BACT000043 (rplN) 3909639467
HAEM0911 3909639467
BACT000053 (rplX) 3947839789
HAEM0912 3947839789
HAEM0913 3980740346
BACT000034 (rplE) 3980740346
BACT000014 (rpsN) 4035840663
HAEM0914 4035840663
BACT000008 (rpsH) 4070041092
HAEM0915 4070041092
BACT000035 (rplF) 4110841641
HAEM0916 4110841641
BACT000047 (rplR) 4165542008
HAEM0917 4165542008
HAEM0918 4202342523
BACT000005 (rpsE) 4202342523
BACT000059 (rpmD) 4253042709
HAEM0919 4253042709
HAEM0920 4271343147
BACT000044 (rplO) 4271343147
HAEM0921 4315544480
BACT000065 (rpmJ) 4450944622
HAEM0922 4450944622
BACT000013 (rpsM) 4476245118
HAEM0923 4476245118
BACT000011 (rpsK) 4513445523
HAEM0924 4513445523
BACT000004 (rpsD) 4555346173
HAEM0925 4555346173
HAEM0926 4620547191
BACT000046 (rplQ) 4723247618
HAEM0927 4723247618
HAEM0928 4774548341
HAEM0936 5684157728
HAEM0943 6441365567
HAEM0944 6564466693
HAEM0945 6689967897
HAEM0946 6804269037
HAEM0947 6910370623
HAEM0948 7064071650
HAEM0949 7179672530
HAEM0950 7253673093
HAEM0951 7309373557
HAEM0952 7357473870
HAEM0954 7570076005
frdB 7770178189
HAEM0964 8419584413
HAEM1019 8840389551
HAEM1024 9655497036
HAEM1025 9713798243
HAEM1026 9832498914
HAEM1027 9891499708
HAEM1029 100534101385
HAEM1030 101385101906
HAEM1031 101934102248
HAEM1033 102755105460
HAEM1034 105525105935
HAEM1035 106044107900
HAEM1037 108929109651
BACT000002 (rpsB) 108929109651
HAEM1038 109785110636
HAEM1039 (lpxD) 110805111830
HAEM1040 111843112436
HAEM1041 112544114934
HAEM1074 145160146179
HAEM1080 150733150903
BACT000062 (rpmG) 150733150903
BACT000057 (rpmB) 150915151151
HAEM1081 150915151151
HAEM1090 158186158536
BACT000020 (rpsT) 164675164938
HAEM1112 (fis) 175822176121
HAEM1113 176216176701
HAEM1114 176940177905
HAEM1115 178001178582
HAEM1123 191561192640
BACT000063 (rpmH) 201739201873
HAEM1129 201739201873
HAEM1131 202209202469
HAEM1136 209769210284
HAEM1137 210281211225
HAEM1138 211403211741
HAEM1166 211988212986
HAEM1167 212991214607
HAEM1168 214591215238
HAEM1169 215351216352
HAEM1170 216476218473
HAEM1171 227386228330
HAEM1172 228348228839
HAEM1173 229135230082
HAEM1175 230802231686
HAEM1179 233170233670
HAEM1180 233670234281
HAEM1181 234393235232
HAEM1182 235234235851
HAEM1183 235862238285
HAEM1156 241063241716
HAEM1165 (bexB) 241713242510
HAEM1155 (bexB) 241713242510
HAEM1164 (bexC) 242510243643
HAEM1154 (bexC) 242510243643
HAEM1153 243658244842
HAEM1163 (bexD) 243658244842
HAEM1876 (ecs1) 245257246381
HAEM1877 (ecs2) 246399247664
HAEM1878 (ecs3) 247709250684
HAEM1879 (ecs4) 250681252141
HAEM1880 (ecs5) 252157252879
HAEM1881 (ecs6) 252888253265
HAEM1882 (ecs7) 253262254821
HAEM1883 (ecs8) 254832255809
HAEM1148 (hcsA') 255812257854
HAEM1158 (hcsA') 255812257854
HAEM1147 (hcsB) 257907259127
HAEM1157 (hcsB) 257907259127
HAEM0283 267457267576
9795Illuminacontig_0003184737HAEM0266 1306613428 EMBL GBK
HAEM0053 3650638269
HAEM0041 5900959785
HAEM0040 5983860326
HAEM0039 6032661381
HAEM0038 6146162516
HAEM0037 6264764425
HAEM0035 6641166719
HAEM0034 6677367240
HAEM0032 6920770322
HAEM0031 7037471237
HAEM0030 7125372434
HAEM0029 7253172809
HAEM0028 7281173449
HAEM0026 7484275849
HAEM0025 7588776174
HAEM0024 7618977046
HAEM0023 7706178563
HAEM0022 7874480141
HAEM0021 8014381582
HAEM0020 8196583389
HAEM0018 8437384756
HAEM0016 8673187780
HAEM0011 9093991379
HAEM0009 9239693112
HAEM0008 9310594043
HAEM0007 9404596471
HAEM0006 9652097131
HAEM0005 9740298214
HAEM1260 100469100924
HAEM1262 101923102246
ftsI 103234103854
HAEM1268 109478110662
HAEM1269 110674111729
HAEM1274 116387117652
HAEM1281 122548123156
HAEM1286 126271127593
HAEM1296 140658140981
HAEM1309 165994166713
HAEM0001 175564176583
9791Illuminacontig_0004165483BACT000039 (rplJ) 91289619 EMBL GBK
HAEM0763 91289619
HAEM0764 967410045
BACT000036 (rplL) 967410045
HAEM0781 3201732313
HAEM0790 4242642644
HAEM0795 4524045518
HAEM0651 5791759794
BACT000021 (rpsU) 6177961994
HAEM0649 6177961994
BACT000040 (rplK) 7554575973
BACT000030 (rplA) 7597876667
HAEM0628 8847588963
HAEM0869 101765102211
HAEM0840 108015108431
HAEM0839 108575109810
HAEM0835 115368115676
HAEM0834 115676115972
HAEM0833 116092116946
HAEM0825 126009126194
HAEM0815 143097143921
HAEM0812 144757146268
HAEM0811 146289147083
HAEM0814 147312147449
9800Illuminacontig_0005150197HAEM1188 58306726 EMBL GBK
HAEM1197 1715517868
HAEM1198 1810719072
HAEM1205 2726328399
HAEM1206 2841429979
HAEM1210 3327134038
HAEM1211 3404834764
HAEM1212 3474835521
HAEM1214 3707337330
HAEM1216 3767938323
HAEM1217 3835638856
HAEM1238 5771858881
HAEM1239 5899360399
HAEM1240 6040161573
HAEM1241 6184862975
HAEM1242 6297964490
HAEM1243 6454165539
HAEM1244 6577367092
HAEM1252 7425075248
HAEM1253 (oppD) 7524576216
HAEM1255 (oppB) 7717178091
HAEM1256 7817279797
HAEM0225 9066090920
HAEM0212 102455102625
BACT000061 (rpmF) 102455102625
HAEM0203 108582109814
HAEM0199 112643114493
HAEM0150 124839125945
HAEM0149 126067127326
HAEM0118 140434141294
HAEM0126 142587142835
HAEM0125 142838143071
HAEM0124 143156143512
HAEM0123 143887144330
HAEM0121 145283147283
HAEM0120 147299147706
9793Illuminacontig_0006147156HAEM0180 1029310895 EMBL GBK
HAEM0181 1099611553
HAEM0186 2003521210
HAEM0465 2923030150
HAEM0466 3015031031
HAEM0467 3139332271
HAEM0468 3249733669
HAEM0469 3376934308
HAEM0470 3438035291
HAEM0471 3530036406
HAEM0472 3641637687
HAEM0473 3770538319
HAEM0474 3837038564
HAEM0475 3856438905
HAEM0476 3894540804
HAEM0479 4209642419
HAEM0480 4247742893
HAEM0487 4891649335
HAEM0498 6088561193
HAEM0512 7365875085
HAEM0516 7801780815
HAEM0431 8339384082
HAEM0426 8867289133
HAEM0425 8914589885
HAEM0405 107460107777
HAEM0404 107791108177
HAEM0403 108546108752
HAEM0401 111118112356
HAEM0397 116425116694
9788Illuminacontig_0007101826HAEM0864 1747019011 EMBL GBK
HAEM0609 2652726904
HAEM0606 2817628964
HAEM0605 2902029274
HAEM0604 2932429794
atpG 3197332419
HAEM0448 7102071550
HAEM0449 7154371824
HAEM0452 7523876101
HAEM0453 7609876550
adk 7739577871
HAEM1011 8737887782
HAEM1009 8982790537
BACT000050 (rplU) 9435594666
HAEM1005 9435594666
BACT000056 (rpmA) 9468794944
HAEM1004 9468794944
9792Illuminacontig_000860535HAEM0297 868010524 EMBL GBK
HAEM0290 1750017793
HAEM0529 2387724410
HAEM0531 2640526677
HAEM0532 2681627406
HAEM0538 3223632757
HAEM0304 5384554366
HAEM0305 5455155336
HAEM0311 5878459107
9794Illuminacontig_000956286HAEM0115 54515774 EMBL GBK
HAEM0114 57846227
HAEM0113 61999069
HAEM0112 90859492
HAEM0111 950210902
HAEM0110 1091311782
HAEM0109 1178212426
HAEM0108 1243812809
HAEM0107 1282913230
HAEM0104 1398014666
HAEM0101 1723017736
HAEM0100 1775218510
HAEM0099 1848919229
HAEM0098 1923319862
HAEM0097 1996120692
HAEM0096 2078321379
HAEM0094 2208222723
HAEM0092 2415126196
HAEM0091 2628726844
HAEM0090 2706127579
HAEM0089 2760628028
HAEM0088 2827428747
HAEM0087 2876229517
HAEM0085 2992631149
HAEM0084 3129931850
HAEM0082 3354334898
HAEM0081 3490035736
9807Illuminacontig_001046050HAEM0169 42324861 EMBL GBK
BACT000048 (rplS) 52705620
HAEM0254 52705620
BACT000016 (rpsP) 70077255
HAEM0968 1361913885
9790Illuminacontig_001139927HAEM0689 34704375 EMBL GBK
HAEM0675 1925819956
HAEM0672 2256123184
HAEM0670 (lex1) 2414025024
BACT000006 (rpsF) 2829228669
HAEM0665 2829228669
HAEM0664 2865628982
HAEM0663 2899529222
BACT000018 (rpsR) 2899529222
HAEM0662 2923929688
BACT000038 (rplI) 2923929688
HAEM0845 3722737466
9801Illuminacontig_001227097HAEM0740 (metQ) 27293550 EMBL GBK
fucK 1207512419
HAEM0731 1358914239
HAEM0724 2056623097
9787Illuminacontig_001325605HAEM0699 23252795 EMBL GBK
BACT000007 (rpsG) 23252795
BACT000012 (rpsL) 29533327
HAEM0700 29533327
HAEM0710 919711359
HAEM0709 1146612782
HAEM0713 1921820150
HAEM0714 2016021164
recA 2383924264
9804Illuminacontig_001410377HAEM0751 34444013 EMBL GBK
HAEM0750 41214378
HAEM0749 44684854
HAEM0748 49276303
9805 Illumina contig_0015 7637
9808 Illumina contig_0017 3407
9798 Illumina contig_0016 1755
9803 Illumina contig_0018 1696
9796 Illumina contig_0020 1059
9789 Illumina contig_0019 995
9786 Illumina contig_0021 821
9802 Illumina contig_0022 612
9799 Illumina contig_0023 344