Search or browse database

Enter search criteria or leave blank to browse all records. Modify form parameters to filter or enter a list of values.

Isolate provenance/primary metadata fields

Display/sort options

Order by:
Display: records per page

Action Reset

Modify form parameters

Click to add or remove additional query terms:

Provenance fields
Allele designations/scheme field values
Sequence variation
Allele designation counts
Allele designation status
Annotation status
Sequence bin
Tagged sequence counts
Tagged sequence status
Attribute values list
Filters

3,893 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields									MLST									Loci
id	isolate	aliases	country	year	species	serotype	source	disease	adk	atpG	frdB	fucK	mdh	pgi	recA	ST	clonal complex	ftsI
1	477		Finland	1994	Haemophilus influenzae	NT	ear	otitis media	1	1	1	14	15	1	5	1	ST-3 complex	4
415	817		UK [England]	2011	Haemophilus influenzae	NT	sputum	other	121	83	109	48	101	145	97	353	ST-1335 complex	2
495	2019	R3159	USA		Haemophilus influenzae	NT	sputum	chronic obstructive pulmonary disease	28	14	1	1	62	13	1	321	ST-321 complex	50
2222	10P129H1		USA	2005	Haemophilus influenzae	ND	sputum	chronic obstructive pulmonary disease	152	103	109	7	74	145	97	1327
2349	CCUG_4851	ATCC_9007; NCTC_8469	USA	1942	Haemophilus influenzae	c	sputum	other	7	166	6	165	6	16	9	2407	ST-7 complex	102
2350	CCUG_6876	ATCC_9833; NCTC_8473; Pittman_644	USA	1944	Haemophilus influenzae	f	CSF	meningitis	22	6	11	12	58	18	15	123	ST-123 complex	111
2351	CCUG_6877	ATCC_8142; NCTC_8472	USA	1941	Haemophilus influenzae	e			18	6	26	7	10	28	12	68	ST-18 complex	55
2352	CCUG_7317	ATCC_9795; NCTC_8467; Pittman_641	USA	1944	Haemophilus influenzae	b	CSF	meningitis	10		4		4	3	8			225
2353	CCUG_33775	ATCC_10211; Pittman_572	USA	1946	Haemophilus influenzae	b	CSF	meningitis	10	14	4	3	4	3	8	44	ST-6 complex	10
2354	H06		Australia	2008	Haemophilus influenzae	NT	nasal swab	carriage		90	172		261	136				226
2355	H17		Australia	2008	Haemophilus influenzae	NT	nasal swab	carriage	150	24	134	0	209	145	122	2455		72
2356	H30		Australia	2008	Haemophilus influenzae	NT	nasal swab	carriage	53	74	134	0	214	80	99	2453		227
2357	H32		Australia	2008	Haemophilus influenzae	NT	nasal swab	carriage	166	118	238		355	356	99			3
2358	H39		Australia	2008	Haemophilus influenzae	NT	nasal swab	carriage	166	118	238	0	355	357	99	2468		3
2359	H51		Australia	2008	Haemophilus influenzae	NT	nasal swab	carriage		70	56			87	60			2
2360	HK_266		Denmark	1976	Haemophilus influenzae	NT	eye	other	1	1	1	14	89	114	37	398	ST-139 complex	10
2361	HK_272		Denmark	1976	Haemophilus influenzae	NT	eye	other	232	8	16	16	29	1	3	2439	ST-155 complex	15
2362	HK_284	Mordhorst_AB1901	Denmark	1976	Haemophilus influenzae	NT	eye	other	55	11	16	14	102	2	3	244	ST-390 complex	179
2363	HK_287	Dawson_443	USA	1976	Haemophilus influenzae	NT	eye	other	33	1	1	1	1	1	5	2017	ST-3 complex	10
2364	HK_288	Dawson_518	USA	1976	Haemophilus influenzae	NT	eye	other	1	1	1	1	1	1	5	3	ST-3 complex	10
2365	HK_292	Dawson_864	USA	1976	Haemophilus influenzae	NT	eye	other	55	167	16		102	2	3			179
2366	HK_369	NCTC_8135; Pittman_181a	USA	1949	Haemophilus influenzae	NT	eye	other	28	29	32	18	42	34	27	77		228
2367	HK_397	ATCC_9332; D99; NCTC_8470; Pittman_522	The Netherlands	1947	Haemophilus influenzae	d	throat swab	carriage	5	15	7	9	7	5	11	47	ST-10 complex	229
2368	HK_391	ATCC_9237; NCTC_8466; Pittman_620	USA	1942	Haemophilus influenzae	a	CSF	meningitis	20	12	25	7	20	23	19	30		230
2369	HK_635	43/LA_Tarr	Papua New Guinea	1980	Haemophilus influenzae	c			14	14	6	8	6	245	21	1701		102

Analysis tools

Breakdown:

Analysis:

Export:

Third party:

linked to any publication
not linked to any publication
Abdeldaim et al. 2013 Diagn Microbiol Infect Dis 76:141-6
Anderson et al. 1972 J Clin Invest 51:31-8
Atack et al. 2015 Nat Commun 6:7828
Barenkamp et al. 1992 Infect Immun 60:1302-13
Binks et al. 2012 PLoS One 7:e34083
Bourne et al. 2014 BMJ Open 4:e004546
Brenner et al. 1988 J Clin Microbiol 26:1524-34
Carrera-Salinas et al. 2023 Microbiol Spectr 11:e0386022
Chapman et al. 1942 J Bacteriol 44:620-1
Cherkaoui et al. 2017 Clin Microbiol Infect 23:118.e9-118.e19
Collins et al. 2019 JAMA 322:2399-2410
Coughlan et al. 2015 Diagn Microbiol Infect Dis 83:112-6
Cuthill et al. 1999 Pediatr Infect Dis J 18:660-2
De Chiara et al. 2014 Proc Natl Acad Sci U S A 111:5439-44
de Gier et al. 2015 J Clin Microbiol 53:3773-8
Deghmane et al. 2019 J Infect 79:7-14
Diricks et al. 2022 Genome Med 14:13
Erwin et al. 2005 Infect Immun 73:5853-63
Eutsey et al. 2013 BMC Genomics 14:484
Farjo et al. 2004 Pediatr Infect Dis J 23:41-6
Fleischmann et al. 1995 Science 269:496-512
Fry et al. 2001 Pediatrics 108:E60
Fuursted et al. 2016 J Glob Antimicrob Resist 5:67-70
Garmendia et al. 2014 PLoS One 9:e97020
Gawronski et al. 2009 Proc Natl Acad Sci U S A 106:16422-7
Gawthorne et al. 2012 PLoS One 7:e32337
Giufrè et al. 2015 Genome Announc 3:
Giufrè et al. 2017 Genome Announc 5:
Gonzalez-Diaz et al. 2022 Sci Rep 12:3189
Greenberg et al. 2004 J Clin Microbiol 42:4604-9
Gu et al. 1996 Infect Immun 64:4047-53
Harrison et al. 2005 J Bacteriol 187:4627-36
HEWITT et al. 1946 Public Health Rep 61:768-78
Hogg et al. 2007 Genome Biol 8:R103
Hoshino et al. 2015 J Med Microbiol 64:355-8
Hu et al. 2016 J Clin Microbiol 54:3010-3017
K C et al. 2021 Microb Genom 7:
Kilian et al. 1976 Acta Pathol Microbiol Scand B 84:132-8
Kilpi et al. 2001 Pediatr Infect Dis J 20:654-62
Krasan et al. 1999 Infect Immun 67:449-54
Langford et al. 2002 J Clin Microbiol 40:268-70
Leibovitz et al. 2003 Pediatr Infect Dis J 22:943-9
Meats et al. 2003 J Clin Microbiol 41:1623-36
Mell et al. 2014 G3 (Bethesda) 4:717-31
Muhlemann et al. 1996 J Clin Microbiol 34:560-3
Munson et al. 2004 Infect Immun 72:3002-10
Murphy et al. 1985 Infect Immun 50:15-21
Mussa et al. 2015 Genome Announc 3:
Musser et al. 1990 Rev Infect Dis 12:75-111
Naito et al. 2018 J Clin Microbiol 56:
Nizet et al. 1996 J Infect Dis 173:180-6
Nørskov-Lauritsen et al. 2021 Eur J Clin Microbiol Infect Dis 40:2077-2085
O'Neill et al. 2003 J Clin Microbiol 41:3064-9
Olynyk et al. 2009 Clin Gastroenterol Hepatol 7:359-62
Osman et al. 2018 Sci Rep 8:14734
Papazisi et al. 2010 Genomics 96:290-302
PARKE 1945 J Pediatr 27:567-71
Pereira et al. 2019 Microbiol Resour Announc 8:
Phillips et al. 1992 Biochemistry 31:4515-26
Pichichero et al. 1982 Lancet 2:960-2
Pinto et al. 2019 Infect Genet Evol 67:126-135
Pittman 1947 J Bacteriol 53:499
PITTMAN et al. 1950 J Bacteriol 59:413-26
Potts et al. 2019 BMC Genomics 20:733
Potts et al. 2022 Microbiol Spectr 10:e0257921
Power et al. 2012 BMC Microbiol 12:273
Price et al. 2015 BMC Genomics 16:641
Price et al. 2017 Future Microbiol 12:585-593
Puig et al. 2014 PLoS One 9:e112711
Roach et al. 2015 PLoS Genet 11:e1005413
Sacchi et al. 2005 J Clin Microbiol 43:3734-42
Skoczyńska et al. 2005 J Clin Microbiol 43:5665-9
Smith-Vaughan et al. 2014 Clin Vaccine Immunol 21:250-2
St Sauver et al. 2000 Emerg Infect Dis 6:622-30
Staples et al. 2017 Epidemiol Infect 145:1727-1736
Strouts et al. 2012 Emerg Infect Dis 18:449-57
Su et al. 2013 Genome Announc 1:
Terrat et al. 2020 Microb Genom 6:
Topaz et al. 2022 Front Microbiol 13:856884
Ukkonen et al. 2000 Lancet 356:1398-402
VanWagoner et al. 2015 Genome Announc 3:
Watts et al. 2019 J Clin Microbiol 57:
Watts et al. 2021 mSystems [Epub ahead of print]:e0017821
Whitby et al. 2015 PLoS One 10:e0136867
Wiertsema et al. 2011 Vaccine 29:5163-70
Zhang et al. 2012 PLoS One 7:e44730