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PubMLST
Public databases for molecular typing
and microbial genome diversity
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Schemes
Please select the scheme you would like to query:
Aeromonas MLST
Brachyspira MLST
Flavobacterium psychrophilum MLST
Lactobacillus salivarius MLST
Ribosomal MLST
Streptococcus agalactiae MLST
Tenacibaculum MLST
Vibrio MLST
Vibrio parahaemolyticus MLST
Yersinia ruckeri MLST
All loci
Please enter your allelic profile below. Blank loci will be ignored.
Aeromonas_gyrB (gyrB)
Aeromonas_groL (groL)
Aeromonas_gltA (gltA)
Aeromonas_metG (metG)
Aeromonas_ppsA (ppsA)
Aeromonas_recA (recA)
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id
isolate
year
location
gps location (latitude)
gps location (longitude)
species
disease
epidemiology
source
source water
temperature
host species
host tissue
comments
sender
curator
date entered
datestamp
adh (Brachyspira_adh)
adhP (Streptococcus_agalactiae_adhP)
Aeromonas_gltA (gltA)
Aeromonas_groL (groL)
Aeromonas_gyrB (gyrB)
Aeromonas_metG (metG)
Aeromonas_ppsA (ppsA)
Aeromonas_recA (recA)
alp (Brachyspira_alp)
atpA (Flavobacterium_psychrophilum_atpA)
atpA (Tenacibaculum_atpA)
atpA (Vibrio_atpA)
atr (Streptococcus_agalactiae_atr)
BACT000001 (rpsA)
BACT000002 (rpsB)
BACT000003 (rpsC)
BACT000004 (rpsD)
BACT000005 (rpsE)
BACT000006 (rpsF)
BACT000007 (rpsG)
BACT000008 (rpsH)
BACT000009 (rpsI)
BACT000010 (rpsJ)
BACT000011 (rpsK)
BACT000012 (rpsL)
BACT000013 (rpsM)
BACT000014 (rpsN)
BACT000015 (rpsO)
BACT000016 (rpsP)
BACT000017 (rpsQ)
BACT000018 (rpsR)
BACT000019 (rpsS)
BACT000020 (rpsT)
BACT000021 (rpsU)
BACT000030 (rplA)
BACT000031 (rplB)
BACT000032 (rplC)
BACT000033 (rplD)
BACT000034 (rplE)
BACT000035 (rplF)
BACT000036 (rplL)
BACT000038 (rplI)
BACT000039 (rplJ)
BACT000040 (rplK)
BACT000042 (rplM)
BACT000043 (rplN)
BACT000044 (rplO)
BACT000045 (rplP)
BACT000046 (rplQ)
BACT000047 (rplR)
BACT000048 (rplS)
BACT000049 (rplT)
BACT000050 (rplU)
BACT000051 (rplV)
BACT000052 (rplW)
BACT000053 (rplX)
BACT000056 (rpmA)
BACT000057 (rpmB)
BACT000058 (rpmC)
BACT000059 (rpmD)
BACT000060 (rpmE)
BACT000061 (rpmF)
BACT000062 (rpmG)
BACT000063 (rpmH)
BACT000064 (rpmI)
BACT000065 (rpmJ)
Brachyspira_adh (adh)
Brachyspira_alp (alp)
Brachyspira_est (est)
Brachyspira_gdh (gdh)
Brachyspira_glp (glp)
Brachyspira_pgm (pgm)
Brachyspira_thi (thi)
dnaE (Vibrio_parahaemolyticus_dnaE)
dnaJ (Yersinia_ruckeri_dnaJ)
dnaK (Flavobacterium_psychrophilum_dnaK)
dnaK (Tenacibaculum_dnaK)
dtdS (Vibrio_parahaemolyticus_dtdS)
est (Brachyspira_est)
Flavobacterium_psychrophilum_atpA (atpA)
Flavobacterium_psychrophilum_dnaK (dnaK)
Flavobacterium_psychrophilum_fumC (fumC)
Flavobacterium_psychrophilum_gyrB (gyrB)
Flavobacterium_psychrophilum_murG (murG)
Flavobacterium_psychrophilum_trpB (trpB)
Flavobacterium_psychrophilum_tuf (tuf)
fumC (Flavobacterium_psychrophilum_fumC)
gdh (Brachyspira_gdh)
glcK (Streptococcus_agalactiae_glcK)
glnA (Streptococcus_agalactiae_glnA)
glnA (Yersinia_ruckeri_glnA)
glp (Brachyspira_glp)
gltA (Aeromonas_gltA)
glyA (Tenacibaculum_glyA)
groL (Aeromonas_groL)
gyrB (Aeromonas_gyrB)
gyrB (Flavobacterium_psychrophilum_gyrB)
gyrB (Tenacibaculum_gyrB)
gyrB (Vibrio_gyrB)
gyrB (Vibrio_parahaemolyticus_gyrB)
gyrB (Yersinia_ruckeri_gyrB)
hsp60 (Yersinia_ruckeri_hsp60)
infB (Tenacibaculum_infB)
Lactobacillus_salivarius_nrdB (nrdB)
Lactobacillus_salivarius_parB (parB)
Lactobacillus_salivarius_pstB (pstB)
Lactobacillus_salivarius_rpoA (rpoA)
Lactobacillus_salivarius_rpsB (rpsB)
metG (Aeromonas_metG)
murG (Flavobacterium_psychrophilum_murG)
nrdB (Lactobacillus_salivarius_nrdB)
parB (Lactobacillus_salivarius_parB)
pgm (Brachyspira_pgm)
pheS (Streptococcus_agalactiae_pheS)
pntA (Vibrio_parahaemolyticus_pntA)
ppsA (Aeromonas_ppsA)
pstB (Lactobacillus_salivarius_pstB)
pyrC (Vibrio_parahaemolyticus_pyrC)
pyrH (Vibrio_pyrH)
recA (Aeromonas_recA)
recA (Vibrio_parahaemolyticus_recA)
recA (Vibrio_recA)
recA (Yersinia_ruckeri_recA)
rlmN (Tenacibaculum_rlmN)
rplA (BACT000030)
rplB (BACT000031)
rplC (BACT000032)
rplD (BACT000033)
rplE (BACT000034)
rplF (BACT000035)
rplI (BACT000038)
rplJ (BACT000039)
rplK (BACT000040)
rplL (BACT000036)
rplM (BACT000042)
rplN (BACT000043)
rplO (BACT000044)
rplP (BACT000045)
rplQ (BACT000046)
rplR (BACT000047)
rplS (BACT000048)
rplT (BACT000049)
rplU (BACT000050)
rplV (BACT000051)
rplW (BACT000052)
rplX (BACT000053)
rpmA (BACT000056)
rpmB (BACT000057)
rpmC (BACT000058)
rpmD (BACT000059)
rpmE (BACT000060)
rpmF (BACT000061)
rpmG (BACT000062)
rpmH (BACT000063)
rpmI (BACT000064)
rpmJ (BACT000065)
rpoA (Lactobacillus_salivarius_rpoA)
rpsA (BACT000001)
rpsB (BACT000002)
rpsB (Lactobacillus_salivarius_rpsB)
rpsC (BACT000003)
rpsD (BACT000004)
rpsE (BACT000005)
rpsF (BACT000006)
rpsG (BACT000007)
rpsH (BACT000008)
rpsI (BACT000009)
rpsJ (BACT000010)
rpsK (BACT000011)
rpsL (BACT000012)
rpsM (BACT000013)
rpsN (BACT000014)
rpsO (BACT000015)
rpsP (BACT000016)
rpsQ (BACT000017)
rpsR (BACT000018)
rpsS (BACT000019)
rpsT (BACT000020)
rpsU (BACT000021)
sdhA (Streptococcus_agalactiae_sdhA)
Streptococcus_agalactiae_adhP (adhP)
Streptococcus_agalactiae_atr (atr)
Streptococcus_agalactiae_glcK (glcK)
Streptococcus_agalactiae_glnA (glnA)
Streptococcus_agalactiae_pheS (pheS)
Streptococcus_agalactiae_sdhA (sdhA)
Streptococcus_agalactiae_tkt (tkt)
Tenacibaculum_atpA (atpA)
Tenacibaculum_dnaK (dnaK)
Tenacibaculum_glyA (glyA)
Tenacibaculum_gyrB (gyrB)
Tenacibaculum_infB (infB)
Tenacibaculum_rlmN (rlmN)
Tenacibaculum_tgt (tgt)
tgt (Tenacibaculum_tgt)
thi (Brachyspira_thi)
thrA (Yersinia_ruckeri_thrA)
tkt (Streptococcus_agalactiae_tkt)
tnaA (Vibrio_parahaemolyticus_tnaA)
trpB (Flavobacterium_psychrophilum_trpB)
tuf (Flavobacterium_psychrophilum_tuf)
Vibrio_atpA (atpA)
Vibrio_gyrB (gyrB)
Vibrio_parahaemolyticus_dnaE (dnaE)
Vibrio_parahaemolyticus_dtdS (dtdS)
Vibrio_parahaemolyticus_gyrB (gyrB)
Vibrio_parahaemolyticus_pntA (pntA)
Vibrio_parahaemolyticus_pyrC (pyrC)
Vibrio_parahaemolyticus_recA (recA)
Vibrio_parahaemolyticus_tnaA (tnaA)
Vibrio_pyrH (pyrH)
Vibrio_recA (recA)
Yersinia_ruckeri_dnaJ (dnaJ)
Yersinia_ruckeri_glnA (glnA)
Yersinia_ruckeri_gyrB (gyrB)
Yersinia_ruckeri_hsp60 (hsp60)
Yersinia_ruckeri_recA (recA)
Yersinia_ruckeri_thrA (thrA)
ST (Aeromonas MLST)
ST (Brachyspira MLST)
ST (Flavobacterium psychrophilum MLST)
ST (Lactobacillus salivarius MLST)
rST (Ribosomal MLST)
genus (Ribosomal MLST)
species (Ribosomal MLST)
subspecies (Ribosomal MLST)
lineage (Ribosomal MLST)
sublineage (Ribosomal MLST)
other designation (Ribosomal MLST)
notes (Ribosomal MLST)
ST (Streptococcus agalactiae MLST)
ST (Tenacibaculum MLST)
ST (Vibrio MLST)
species (Vibrio MLST)
ST (Vibrio parahaemolyticus MLST)
ST (Yersinia ruckeri MLST)
clonal complex (Yersinia ruckeri MLST)
ascending
descending
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