Search or browse database

Enter search criteria or leave blank to browse all records. Modify form parameters to filter or enter a list of values.

Isolate provenance/primary metadata fields

Filters

Publication:
Clonal complex (In…
Include old record versions

Add filter: Add

Display/sort options

Order by:
Display: records per page

Action Reset

Modify form parameters

Click to add or remove additional query terms:

Provenance fields
Allele designations/scheme field values
Allele designation counts
Allele designation status
Sequence bin
Tagged sequence counts
Tagged sequence status
Attribute values list
Filters

6,815 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields										MLST (Achtman)	MLST (Pasteur)	IncF RST							IncHI1 MLST	IncHI2 DLST	IncI1 MLST		incN MLST	Loci
id	isolate	aliases	species	country	year	disease	source	serovar	pathotype	ST	ST	FII	FIC	FIIK	FIIS	FIIY	FIA	FIB	ST	ST	ST	clonal complex	ST	gyrB_full
1	SF13-14_2	SF 033	Escherichia coli	UK	2013		food			88	74	18	4					1
2	SF13-14_5	SF 070	Escherichia coli	UK	2014		food			224	479	18	5								36	CC-5
3	SF13-14_6	SF 075	Escherichia coli	UK	2014		food			1607		4									3	CC-3
4	SF13-14_8	SF 120	Escherichia coli	UK	2014		food			602	534	24						1			3	CC-3
5	SF13-14_9	SF 158	Escherichia coli	UK	2014		food			57		2,18	4					1			3	CC-3
6	SF13-14_10	SF 203	Escherichia coli	UK	2014		food			2628											3	CC-3
7	SF13-14_11	SF 207	Escherichia coli	UK	2014		food			1607		4,92									3	CC-3
8	SF13-14_13	SF 320	Escherichia coli	Ireland	2014		food			165	809	29,88									3	CC-3
9	SF13-14_15	SF 332	Escherichia coli	Ireland	2014		food			117	48	2						1			3	CC-3
10	SF13-14_16	SF 381	Escherichia coli	Ireland	2014		food			58	87	4,56					17				218
11	SF13-14_20	SF 501	Escherichia coli	Ireland	2014		food			10											3	CC-3
12	SF13-14_21	SF 506	Escherichia coli	Ireland	2014		food			88		2					1,6	1
13	SF13-14_23	SF 539	Escherichia coli	Ireland	2014		food			93		18	4					1			3	CC-3
14	SF13-14_57	SF 022	Escherichia coli	UK	2013		food			744	2	10
15	SF13-14_64	SF 101	Escherichia coli	UK	2014		food			224	479	18	4					61			48
16	SF13-14_67	SF 125	Escherichia coli	UK	2014		food			2599	950	18	4					1
17	SF13-14_68	SF 139	Escherichia coli	UK	2014		food			90	66	24						1			48
18	SF13-14_82	SF 332	Escherichia coli	Ireland	2014		food			345	636
19	SF13-14_87	SF 381	Escherichia coli	Ireland	2014		food			744	2	2
20	SF13-14_90	SF 415	Escherichia coli	Ireland	2014		food			453	86	18	4					1			80
21	SF13-14_91	SF 417	Escherichia coli	Ireland	2014		food			10	2	18	4					16
22	SF13-14_94	SF 539	Escherichia coli	Ireland	2014		food			1196							18				1
23	SF13-14_103	SF 191	Escherichia coli	UK	2014		food			448	58
24	SF13-14_104	SF 192	Escherichia coli	UK	2014		food			448	58
25	SF13-14_109	SF 230	Escherichia coli	UK	2014		food			2067		4,18	4				5,6	1

Analysis tools

Breakdown:

Analysis:

Export:

Third party:

linked to any publication
not linked to any publication
Chen et al. 2013 Sci Transl Med 5:184ra60
Eppinger et al. 2013 Genome Announc 1:e0013412
Finkelstein et al. 1976 J Clin Microbiol 3:382-4
Guy et al. 2013 PLoS One 8:e63027
Hazen et al. 2012 J Bacteriol 194:3026-7
Hazen et al. 2013 Genome Announc 1:
Hobley et al. 2020 J Bacteriol 202:
Klein et al. 2013 Genome Announc 1:
Levine et al. 1985 J Infect Dis 152:550-9
Li et al. 2013 Genome Announc 1:
Lindsey et al. 2015 Genome Announc 3:
Luo et al. 2011 Proc Natl Acad Sci U S A 108:7200-5
Onodera et al. 2012 J Bacteriol 194:3022
Rasko et al. 2008 J Bacteriol 190:6881-93
Reeves et al. 2011 PLoS One 6:e26907
Rojas et al. 2013 Genome Announc 1:e0011013
Ronco et al. 2017 BMC Genomics 18:13
Salipante et al. 2015 Genome Res 25:119-28
Semmler et al. 2013 Genome Announc 1:
Shepard et al. 2012 J Bacteriol 194:395-405
Subashchandrabose et al. 2013 Pathog Dis 69:66-70
Tan et al. 2011 J Bacteriol 193:5038
Tatusova et al. 2014 Nucleic Acids Res 42:D553-9
Trees et al. 2014 Genome Announc 2:
Yi et al. 2011 J Bacteriol 193:3681
Yi et al. 2012 J Bacteriol 194:3742-3