Escherichia isolates database
The Escherichia PubMLST database exists to host project data and to facilitate the use of BIGSdb analysis tools for data belonging to this organism. We are not the authoritative server for assigning MLST, cgMLST, or wgMLST definitions for this organism. We synchronize these assignments from Enterobase and all new allele and profile definitions need to be submitted there.
Projects
Option settings
- Set general options - including isolate table field handling.
- Set display and query options for locus, schemes or scheme fields.
Submissions
General information
- About BIGSdb
- Database status
- Last updated: 2020-06-30
Export
- Export dataset
- Contigs
- Sequences - XMFA / concatenated FASTA formats
Third party tools
- GrapeTree - Visualization of genomic relationships
- iTOL - Phylogenetic trees with data overlays
- PhyloViz - Visualization and phylogenetic inference
- Microreact - Open data visualization and sharing for genomic epidemiology