Full information on isolate JIR1204 (id:21)
Provenance/primary metadata
- id
- 21
- isolate
- JIR1204
- source
- Sheep
- country
- Australia
- continent
- Oceania
- location
- New South Wales
- collection institute
- Monash
- year
- 2014
- disease state
- footrot
- sample
- swab
- phenotype
- benign
- serogroup by sequence
- I
- ENA accession
- ERR506941 www.ebi.ac.uk
- sender
- Adam Blanchard, University of Nottingham
- curator
- Auto Tagger
- update history
- 5 updates show details
- date entered
- 2017-09-05
- datestamp
- 2018-07-19
Publications (2)
- Blanchard AM, Jolley KA, Maiden MCJ, Coffey TJ, Maboni G, Staley CE, Bollard NJ, Warry A, Emes RD, Davies PL, Tötemeyer S (2018). The Applied Development of a Tiered Multilocus Sequence Typing (MLST) Scheme forDichelobacter nodosus. Front Microbiol 9:551
- Kennan RM, Gilhuus M, Frosth S, Seemann T, Dhungyel OP, Whittington RJ, Boyce JD, Powell DR, Aspán A, Jørgensen HJ, Bulach DM, Rood JI (2014). Genomic evidence for a globally distributed, bimodal population in the ovine footrot pathogen Dichelobacter nodosus. MBio 5:e01821-14
Sequence bin
- contigs
- 22
- total length
- 1,325,406 bp
- max length
- 220,455 bp
- mean length
- 60,246 bp
- N50
- 127,515
- L50
- 5
- N90
- 42,080
- L90
- 11
- N95
- 25,865
- L95
- 13
- loci tagged
- 746
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: