Allele information - CPF_RS11825: 5
Provenance/meta data
- locus
- CPF_RS11825
- allele
- 5
- sequence
- ATGGACAATA TAAATCATAT TTTATCAAAG GAACTTGGTA TTTCATTAAA ACAGGTAACA AGTGTTATAG AGATGTTAGA TGAAGGAAAT ACAGTACCTT TCATAGCTAG ATATAGAAAA GAAAGAACTG GTGGATTAAC AGATGAGGTA CTAAGAAAAT TTAATGAGAG ATTAACATAT CTAAGAAATT TAGAAAGTAG AAAAGAAGAT GTTTTAAGAA TAATAGAGGA GCAAGAAAAA TTAACTCCAG AATTAAAACT GAATATTGAG AAAGCTACTA CTCTTACTGA GGTTGAAGAT ATATATAGAC CTTTTAAAGC TAAAAAGAGA ACAAGAGCTA CTATGGCTAT TGAAAAAGGA TTAAAGCCAC TAGCAGAGTT TATTTTATCA GGAGAGTTTA ATGGTAATAT AGTAGAAGAG GCTAATAAAT ATATTAATGA AGAAAAAGGT GTTAAAAATG AAGAGGAAGC TTTTCAAGGG GCTATGGATA TTATAAGTGA AATAATATCT GATAATGCTG ATTATAGAAA ATGGATTAGA AATTTTGTTC AAAAGGATGG AATAATTCAG GTAAAAGGAA GCAGTGAAGA ACAAACACCT TATGAAATGT ATTATGATTA TAAGGAACCT GTTAGAACAA TTCCATCTCA TAGAATATTA GCTATAAATA GAGGAGAAAA GGAAAAAATT CTTTCTGTTA AAGTAACTTG TAATGATGAT AAAATTATAG ATTATTTAAA TAAAAAAGTT TTAAAGGGAA ATAAAATTAC TGATAAGTAT TTAGAAGAAA GTATAAAGGA TTCATTTAAA AGACTTATAT ATCCTTCAAT AGAAAGGGAA ATAAGAAGTG AATTAACCTC TAAGGGAGAA GAGGGAGCCA TTGATATATT TAAGGCTAAT TTAAAAGCTC TTTTAATGCA AGCTCCTATT AAGGGGAAAG TTGTAATGGG ATTTGACCCT GGCTTTAGAA CTGGATGTAA GGTAGCAATC TTAGACGAAA CAGGAAAATT TGTTGAGAAT ACAACAGTTT ATCCAACAGC CCCTCAAAAT AGAATTGATG AAACAATAAG TACACTTAAA AAACTTATTA AAAAACATGG AGTTCAAGTT ATTTCTTTAG GAAATGGAAC AGCTTCAAGA GAATCAGAAG AAGTAATTGC AAAGATGCTT AAGGAAATAA AAGAGGAAAC AGGAAAAGAA TTATTTTATG TTATAGTTTC TGAGGCAGGT GCTTCTGTTT ATTCAGCATC AGAACTTGCA AATAAGGAAT ATCCAGACTT AGATGTAACT GTAAGAGGAG CAATTTCTAT AGGAAGAAGA CTTCAAGATC CATTAGCTGA GCTTGTTAAA ATAGATCCTA AGGCTATAGG AGTAGGACAA TATCAACATG ATGTAACTCA GAAAAAACTT GATGAATCCT TAGCAGGGAT AGTTGAGGAT TGTGTTAATA ATGTAGGAGT AGATTTAAAT ATAGCAACTC CATCATTATT AAGTTATATT TCAGGTATAA ATGCTTCAAT AGCTAAAAAT ATTGTTGATT ATAGAGAAGA AAATGGTAAG TTTAAAAGTA GAAAAGAGCT TTTAAAAGTT AAAAGATTAG GACAAAAAGC TTATGAACAA TGTGCAGGAT TCTTAAGGGT TATGGAAAGC AAAGAAGCTT TAGATAATAC CTCAGTTCAT CCAGAGTCAT ATAAAGTAGC TAAGGAACTT ATAAAAACTT TAGGATATAC AGAAGAAGAT TTAAAAAATG GCAAATTAGT AGATATAGAT GAGAGAGTAA AAGCAAAAGG AATTTCTAAC TTAGCAAAAG AATTAGAAGT TGGAGAACCA ACACTTAATG ATATTATAAA GGAAATTAAA AAGCCTGGAA GAGATCCAAG AGAGGAATTA CCTAAACCAA TATTTAAGTC TGGCGTAATA GAAATGAAAG ATTTAAAACC AGGTATGATT TTAATGGGGA CAGTTAGAAA TGTATCTGAT TTTGGTGCTT TTGTAGATAT TGGAGTTCAC CAAGATGGAT TAGTTCATAA GAGCCAAATG GCAGATAAAT TTGTTAAACA TCCACTTGAT ATAGTTAAGG TTGGAGATAT AGTAGAAGTT AGAATATTAG ATGTTGATTT AAAAAGAAAG AGAATTTCAT TATCAATGAA AAAAGAAGGT TAA
- length
- 2163
- status
- WGS: automated extract (BIGSdb)
- date entered
- 2020-10-26
- datestamp
- 2020-10-26
- sender
- Auto Definer
- curator
- Auto Definer, PubMLST (automated assignment script)
Profiles containing this allele
- cgMLST
Isolate databases
- PubMLST isolates
- Contains data for a collection of isolates that represent the total known diversity of Clostridium perfringens. For every allelic profile in the profiles database there should be at least one corresponding isolate deposited here. Any isolate may be submitted to this database and consequently it should be noted that it does not represent a population sample.