Full information on isolate B_Aus5 (id:847)
Provenance/primary metadata
- id
- 847
- isolate
- B_Aus5
- species
- Chlamydia trachomatis
- serovar
- B
- genovar
- B
- country
- Australia
- continent
- Oceania
- host
- human
- source
- ocular
- comments
- Genotype: B-Ba isolated 1985-1991
- bioproject accession
- PRJEB2035 www.ebi.ac.uk
- biosample accession
- SAMEA1559188 www.ebi.ac.uk
- ENA run accession
- ERR189745 www.ebi.ac.uk
- rMLST database accession
- 65091
- sender
- Keith Jolley, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 43 updates show details
- date entered
- 2014-12-15
- datestamp
- 2022-12-01
Publications (2)
- Andersson P, Harris SR, Smith HMBS, Hadfield J, O'Neill C, Cutcliffe LT, Douglas FP, Asche LV, Mathews JD, Hutton SI, Sarovich DS, Tong SYC, Clarke IN, Thomson NR, Giffard PM (2016). Chlamydia trachomatis from Australian Aboriginal people with trachoma are polyphyletic composed of multiple distinctive lineages. Nat Commun 7:10688
- Hadfield J, Harris SR, Seth-Smith HMB, Parmar S, Andersson P, Giffard PM, Schachter J, Moncada J, Ellison L, Vaulet MLG, Fermepin MR, Radebe F, Mendoza S, Ouburg S, Morré SA, Sachse K, Puolakkainen M, Korhonen SJ, Sonnex C, Wiggins R, Jalal H, Brunelli T, Casprini P, Pitt R, Ison C, Savicheva A, Shipitsyna E, Hadad R, Kari L, Burton MJ, Mabey D, Solomon AW, Lewis D, Marsh P, Unemo M, Clarke IN, Parkhill J, Thomson NR (2017). Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome Res 27:1220-1229
Sequence bin
- contigs
- 429
- total length
- 1,140,081 bp
- max length
- 46,889 bp
- mean length
- 2,658 bp
- N50
- 8,798
- L50
- 39
- N90
- 1,102
- L90
- 188
- N95
- 586
- L95
- 260
- %GC
- 41.33
- Ns
- 0
- gaps
- 0
- loci tagged
- 904
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| C. trachomatis cgMLST v1.0 | 817 | 670 | 82 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Chlamydia trachomatis | Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia trachomatis | 100% |
Analysis performed: 2023-01-25
Schemes and loci
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