Full information on isolate B_Aus5 (id:847)

Provenance/primary metadata

id
847
isolate
B_Aus5
species
Chlamydia trachomatis
serovar
B
genovar
B
country
Australia
continent
Oceania
host
human
source
ocular
comments
Genotype: B-Ba isolated 1985-1991
bioproject accession
PRJEB2035 www.ebi.ac.uk
biosample accession
SAMEA1559188 www.ebi.ac.uk
ENA run accession
ERR189745 www.ebi.ac.uk
rMLST database accession
65091
sender
Keith Jolley, University of Oxford, UK
curator
Auto Tagger
update history
43 updates show details
date entered
2014-12-15
datestamp
2022-12-01

Publications (2)

  • Andersson P, Harris SR, Smith HMBS, Hadfield J, O'Neill C, Cutcliffe LT, Douglas FP, Asche LV, Mathews JD, Hutton SI, Sarovich DS, Tong SYC, Clarke IN, Thomson NR, Giffard PM (2016). Chlamydia trachomatis from Australian Aboriginal people with trachoma are polyphyletic composed of multiple distinctive lineages. Nat Commun 7:10688
  • Hadfield J, Harris SR, Seth-Smith HMB, Parmar S, Andersson P, Giffard PM, Schachter J, Moncada J, Ellison L, Vaulet MLG, Fermepin MR, Radebe F, Mendoza S, Ouburg S, MorrĂ© SA, Sachse K, Puolakkainen M, Korhonen SJ, Sonnex C, Wiggins R, Jalal H, Brunelli T, Casprini P, Pitt R, Ison C, Savicheva A, Shipitsyna E, Hadad R, Kari L, Burton MJ, Mabey D, Solomon AW, Lewis D, Marsh P, Unemo M, Clarke IN, Parkhill J, Thomson NR (2017). Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome Res 27:1220-1229

Sequence bin

contigs
429
total length
1,140,081 bp
max length
46,889 bp
mean length
2,658 bp
N50
8,798
L50
39
N90
1,102
L90
188
N95
586
L95
260
%GC
41.33
Ns
0
gaps
0
loci tagged
904

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
C. trachomatis cgMLST v1.081767082

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Chlamydia trachomatis Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia trachomatis 100%

Analysis performed: 2023-01-25

Schemes and loci

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