Full information on isolate G_Fin144 (id:821)

Provenance/primary metadata

id
821
isolate
G_Fin144
species
Chlamydia trachomatis
genovar
G
country
Finland
continent
Europe
year
2010
host
human
sex
female
source
endocervix
bioproject accession
PRJEB2035 www.ebi.ac.uk
biosample accession
SAMEA1903197 www.ebi.ac.uk
ENA run accession
ERR278137 www.ebi.ac.uk
rMLST database accession
60751
sender
Keith Jolley, University of Oxford, UK
curator
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update history
31 updates show details
date entered
2014-12-15
datestamp
2022-12-01

Publication (1)

  • Hadfield J, Harris SR, Seth-Smith HMB, Parmar S, Andersson P, Giffard PM, Schachter J, Moncada J, Ellison L, Vaulet MLG, Fermepin MR, Radebe F, Mendoza S, Ouburg S, MorrĂ© SA, Sachse K, Puolakkainen M, Korhonen SJ, Sonnex C, Wiggins R, Jalal H, Brunelli T, Casprini P, Pitt R, Ison C, Savicheva A, Shipitsyna E, Hadad R, Kari L, Burton MJ, Mabey D, Solomon AW, Lewis D, Marsh P, Unemo M, Clarke IN, Parkhill J, Thomson NR (2017). Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome Res 27:1220-1229

Sequence bin

contigs
275
total length
1,160,130 bp
max length
103,239 bp
mean length
4,219 bp
N50
36,805
L50
11
N90
2,530
L90
43
N95
588
L95
93
%GC
41.29
Ns
0
gaps
0
loci tagged
1,012

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
C. trachomatis cgMLST v1.081778696

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Chlamydia trachomatis Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia trachomatis 100%

Analysis performed: 2023-01-25

Schemes and loci

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