Full information on isolate K_Fin139 (id:741)

Provenance/primary metadata

id
741
isolate
K_Fin139
species
Chlamydia trachomatis
country
Finland
continent
Europe
year
2010
host
unknown
sex
female
source
endocervix
ENA run accession
ERR278163 www.ebi.ac.uk
rMLST database accession
42753
sender
Keith Jolley, University of Oxford, UK
curator
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update history
24 updates show details
date entered
2014-12-15
datestamp
2022-12-01

Publication (1)

  • Hadfield J, Harris SR, Seth-Smith HMB, Parmar S, Andersson P, Giffard PM, Schachter J, Moncada J, Ellison L, Vaulet MLG, Fermepin MR, Radebe F, Mendoza S, Ouburg S, MorrĂ© SA, Sachse K, Puolakkainen M, Korhonen SJ, Sonnex C, Wiggins R, Jalal H, Brunelli T, Casprini P, Pitt R, Ison C, Savicheva A, Shipitsyna E, Hadad R, Kari L, Burton MJ, Mabey D, Solomon AW, Lewis D, Marsh P, Unemo M, Clarke IN, Parkhill J, Thomson NR (2017). Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome Res 27:1220-1229

Sequence bin

contigs
240
total length
1,138,549 bp
max length
117,937 bp
mean length
4,744 bp
N50
59,743
L50
7
N90
4,355
L90
28
N95
692
L95
70
%GC
41.24
Ns
0
gaps
0
loci tagged
1,004

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
C. trachomatis cgMLST v1.081778596

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Chlamydia trachomatis Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia trachomatis 100%

Analysis performed: 2023-01-25

Schemes and loci

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