Full information on isolate ERR211048 (id:739)
Provenance/primary metadata
- id
- 739
- isolate
- ERR211048
- species
- Chlamydia trachomatis
- country
- Unknown
- host
- unknown
- ENA run accession
- ERR211048 www.ebi.ac.uk
- rMLST database accession
- 42751
- sender
- Keith Jolley, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 33 updates show details
- date entered
- 2014-12-15
- datestamp
- 2022-12-01
Sequence bin
- contigs
- 234
- total length
- 1,093,240 bp
- max length
- 92,982 bp
- mean length
- 4,672 bp
- N50
- 20,933
- L50
- 16
- N90
- 2,520
- L90
- 65
- N95
- 775
- L95
- 104
- %GC
- 41.63
- Ns
- 0
- gaps
- 0
- loci tagged
- 966
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| C. trachomatis cgMLST v1.0 | 817 | 734 | 89 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Chlamydia trachomatis | Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia trachomatis | 100% |
Analysis performed: 2021-03-15
Schemes and loci
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