Full information on isolate B_Aus2 (id:687)

Provenance/primary metadata

id
687
isolate
B_Aus2
species
Chlamydia trachomatis
serovar
B
genovar
B
country
Australia
continent
Oceania
host
human
source
ocular
comments
isolated 1986/1991
bioproject accession
PRJEB2035 www.ebi.ac.uk
biosample accession
SAMEA1559248 www.ebi.ac.uk
ENA run accession
ERR189742 www.ebi.ac.uk
rMLST database accession
10543
sender
Keith Jolley, University of Oxford, UK
curator
Auto Tagger
update history
15 updates show details
date entered
2014-12-15
datestamp
2022-12-01

Publication (1)

  • Andersson P, Harris SR, Smith HMBS, Hadfield J, O'Neill C, Cutcliffe LT, Douglas FP, Asche LV, Mathews JD, Hutton SI, Sarovich DS, Tong SYC, Clarke IN, Thomson NR, Giffard PM (2016). Chlamydia trachomatis from Australian Aboriginal people with trachoma are polyphyletic composed of multiple distinctive lineages. Nat Commun 7:10688

Sequence bin

contigs
27
total length
1,046,688 bp
max length
598,701 bp
mean length
38,767 bp
N50
598,701
L50
1
N90
120,895
L90
3
N95
38,899
L95
4
%GC
41.23
Ns
0
gaps
0
loci tagged
1,030

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
C. trachomatis cgMLST v1.081780798

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Chlamydia trachomatis Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia trachomatis 100%

Analysis performed: 2021-03-15

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
Ct_cgc_200C. trachomatis cgMLST v1.0Single-linkage200experimental6 (101 isolates)
Ct_cgc_100C. trachomatis cgMLST v1.0Single-linkage100experimental45 (6 isolates)
Ct_cgc_50C. trachomatis cgMLST v1.0Single-linkage50experimental76 (6 isolates)
Ct_cgc_25C. trachomatis cgMLST v1.0Single-linkage25experimental129 (2 isolates)
Ct_cgc_10C. trachomatis cgMLST v1.0Single-linkage10experimental152 (2 isolates)
Ct_cgc_5C. trachomatis cgMLST v1.0Single-linkage5experimental160 (2 isolates)
Ct_cgc_200C. trachomatis cgMLST v1.0Single-linkage200experimental6 (101 isolates)
Ct_cgc_100C. trachomatis cgMLST v1.0Single-linkage100experimental45 (6 isolates)
Ct_cgc_50C. trachomatis cgMLST v1.0Single-linkage50experimental76 (6 isolates)
Ct_cgc_25C. trachomatis cgMLST v1.0Single-linkage25experimental129 (2 isolates)
Ct_cgc_10C. trachomatis cgMLST v1.0Single-linkage10experimental152 (2 isolates)
Ct_cgc_5C. trachomatis cgMLST v1.0Single-linkage5experimental160 (2 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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