Full information on isolate L1_LGV98 (id:623)

Provenance/primary metadata

id
623
isolate
L1_LGV98
species
Chlamydia trachomatis
country
South Africa
continent
Africa
host
unknown
sex
male
bioproject accession
PRJEB2035 www.ebi.ac.uk
biosample accession
SAMEA1008224 www.ebi.ac.uk
ENA run accession
ERR071990 www.ebi.ac.uk
rMLST database accession
10464
sender
Keith Jolley, University of Oxford, UK
curator
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update history
32 updates show details
date entered
2014-12-15
datestamp
2022-12-01

Publication (1)

  • Hadfield J, Harris SR, Seth-Smith HMB, Parmar S, Andersson P, Giffard PM, Schachter J, Moncada J, Ellison L, Vaulet MLG, Fermepin MR, Radebe F, Mendoza S, Ouburg S, MorrĂ© SA, Sachse K, Puolakkainen M, Korhonen SJ, Sonnex C, Wiggins R, Jalal H, Brunelli T, Casprini P, Pitt R, Ison C, Savicheva A, Shipitsyna E, Hadad R, Kari L, Burton MJ, Mabey D, Solomon AW, Lewis D, Marsh P, Unemo M, Clarke IN, Parkhill J, Thomson NR (2017). Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome Res 27:1220-1229

Sequence bin

contigs
671
total length
1,514,252 bp
max length
65,923 bp
mean length
2,257 bp
N50
13,973
L50
27
N90
691
L90
227
N95
358
L95
385
%GC
36.92
Ns
0
gaps
0
loci tagged
902

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
C. trachomatis cgMLST v1.081769985

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Chlamydia trachomatis Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia trachomatis 85%
SPECIES Mesomycoplasma hyorhinis Tenericutes > Mollicutes > Mycoplasmatales > Mycoplasmataceae > Mesomycoplasma > Mesomycoplasma hyorhinis 14%

Analysis performed: 2023-01-25

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