Full information on isolate L1_LGV98 (id:623)
Provenance/primary metadata
- id
- 623
- isolate
- L1_LGV98
- species
- Chlamydia trachomatis
- country
- South Africa
- continent
- Africa
- host
- unknown
- sex
- male
- bioproject accession
- PRJEB2035 www.ebi.ac.uk
- biosample accession
- SAMEA1008224 www.ebi.ac.uk
- ENA run accession
- ERR071990 www.ebi.ac.uk
- rMLST database accession
- 10464
- sender
- Keith Jolley, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 32 updates show details
- date entered
- 2014-12-15
- datestamp
- 2022-12-01
Publication (1)
- Hadfield J, Harris SR, Seth-Smith HMB, Parmar S, Andersson P, Giffard PM, Schachter J, Moncada J, Ellison L, Vaulet MLG, Fermepin MR, Radebe F, Mendoza S, Ouburg S, Morré SA, Sachse K, Puolakkainen M, Korhonen SJ, Sonnex C, Wiggins R, Jalal H, Brunelli T, Casprini P, Pitt R, Ison C, Savicheva A, Shipitsyna E, Hadad R, Kari L, Burton MJ, Mabey D, Solomon AW, Lewis D, Marsh P, Unemo M, Clarke IN, Parkhill J, Thomson NR (2017). Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome Res 27:1220-1229
Sequence bin
- contigs
- 671
- total length
- 1,514,252 bp
- max length
- 65,923 bp
- mean length
- 2,257 bp
- N50
- 13,973
- L50
- 27
- N90
- 691
- L90
- 227
- N95
- 358
- L95
- 385
- %GC
- 36.92
- Ns
- 0
- gaps
- 0
- loci tagged
- 902
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| C. trachomatis cgMLST v1.0 | 817 | 699 | 85 | |
Analysis
rMLST species identification
Analysis performed: 2023-01-25
Schemes and loci
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