Full information on isolate F_UK466273 (id:4844)
Provenance/primary metadata
- id
- 4844
- isolate
- F_UK466273
- species
- Chlamydia trachomatis
- genovar
- F
- country
- UK
- continent
- Europe
- year
- 2012
- host
- human
- sex
- female
- bioproject accession
- PRJEB2949 www.ebi.ac.uk
- biosample accession
- SAMEA2046008 www.ebi.ac.uk
- ENA run accession
- ERR658592 www.ebi.ac.uk
- sender
- Odile Harrison, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 7 updates show details
- date entered
- 2022-07-07
- datestamp
- 2022-12-01
Publication (1)
- Hadfield J, Harris SR, Seth-Smith HMB, Parmar S, Andersson P, Giffard PM, Schachter J, Moncada J, Ellison L, Vaulet MLG, Fermepin MR, Radebe F, Mendoza S, Ouburg S, Morré SA, Sachse K, Puolakkainen M, Korhonen SJ, Sonnex C, Wiggins R, Jalal H, Brunelli T, Casprini P, Pitt R, Ison C, Savicheva A, Shipitsyna E, Hadad R, Kari L, Burton MJ, Mabey D, Solomon AW, Lewis D, Marsh P, Unemo M, Clarke IN, Parkhill J, Thomson NR (2017). Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome Res 27:1220-1229
Sequence bin
- contigs
- 324
- total length
- 1,039,652 bp
- max length
- 22,329 bp
- mean length
- 3,209 bp
- N50
- 5,412
- L50
- 56
- N90
- 1,591
- L90
- 188
- N95
- 1,008
- L95
- 228
- %GC
- 41.36
- Ns
- 0
- gaps
- 0
- loci tagged
- 754
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| C. trachomatis cgMLST v1.0 | 817 | 593 | 72 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Chlamydia trachomatis | Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia trachomatis | 97% |
Analysis performed: 2023-01-25
Schemes and loci
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