Full information on isolate F_UK466273 (id:4844)

Provenance/primary metadata

id
4844
isolate
F_UK466273
species
Chlamydia trachomatis
genovar
F
country
UK
continent
Europe
year
2012
host
human
sex
female
bioproject accession
PRJEB2949 www.ebi.ac.uk
biosample accession
SAMEA2046008 www.ebi.ac.uk
ENA run accession
ERR658592 www.ebi.ac.uk
sender
Odile Harrison, University of Oxford, UK
curator
Auto Tagger
update history
7 updates show details
date entered
2022-07-07
datestamp
2022-12-01

Publication (1)

  • Hadfield J, Harris SR, Seth-Smith HMB, Parmar S, Andersson P, Giffard PM, Schachter J, Moncada J, Ellison L, Vaulet MLG, Fermepin MR, Radebe F, Mendoza S, Ouburg S, MorrĂ© SA, Sachse K, Puolakkainen M, Korhonen SJ, Sonnex C, Wiggins R, Jalal H, Brunelli T, Casprini P, Pitt R, Ison C, Savicheva A, Shipitsyna E, Hadad R, Kari L, Burton MJ, Mabey D, Solomon AW, Lewis D, Marsh P, Unemo M, Clarke IN, Parkhill J, Thomson NR (2017). Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome Res 27:1220-1229

Sequence bin

contigs
324
total length
1,039,652 bp
max length
22,329 bp
mean length
3,209 bp
N50
5,412
L50
56
N90
1,591
L90
188
N95
1,008
L95
228
%GC
41.36
Ns
0
gaps
0
loci tagged
754

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
C. trachomatis cgMLST v1.081759372

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Chlamydia trachomatis Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia trachomatis 97%

Analysis performed: 2023-01-25

Schemes and loci

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