Full information on isolate E_UK912889 (id:4822)

Provenance/primary metadata

id
4822
isolate
E_UK912889
species
Chlamydia trachomatis
genovar
E
country
UK
continent
Europe
year
2012
host
human
sex
female
bioproject accession
PRJEB2949 www.ebi.ac.uk
biosample accession
SAMEA2046084 www.ebi.ac.uk
ENA run accession
ERR658610 www.ebi.ac.uk
sender
Odile Harrison, University of Oxford, UK
curator
Auto Tagger
update history
6 updates show details
date entered
2022-06-22
datestamp
2022-12-01

Publication (1)

  • Hadfield J, Harris SR, Seth-Smith HMB, Parmar S, Andersson P, Giffard PM, Schachter J, Moncada J, Ellison L, Vaulet MLG, Fermepin MR, Radebe F, Mendoza S, Ouburg S, MorrĂ© SA, Sachse K, Puolakkainen M, Korhonen SJ, Sonnex C, Wiggins R, Jalal H, Brunelli T, Casprini P, Pitt R, Ison C, Savicheva A, Shipitsyna E, Hadad R, Kari L, Burton MJ, Mabey D, Solomon AW, Lewis D, Marsh P, Unemo M, Clarke IN, Parkhill J, Thomson NR (2017). Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome Res 27:1220-1229

Sequence bin

contigs
234
total length
1,045,516 bp
max length
22,268 bp
mean length
4,469 bp
N50
7,779
L50
43
N90
2,303
L90
137
N95
1,463
L95
165
%GC
41.27
Ns
0
gaps
0
loci tagged
791

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
C. trachomatis cgMLST v1.081762976

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Chlamydia trachomatis Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia trachomatis 86%

Analysis performed: 2023-01-25

Schemes and loci

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