Full information on isolate E_UK584031 (id:4815)

Provenance/primary metadata

id
4815
isolate
E_UK584031
species
Chlamydia trachomatis
genovar
E
country
UK
continent
Europe
year
2012
host
human
sex
female
bioproject accession
PRJEB2949 www.ebi.ac.uk
biosample accession
SAMEA2044007 www.ebi.ac.uk
ENA run accession
ERR658602 www.ebi.ac.uk
sender
Odile Harrison, University of Oxford, UK
curator
Auto Tagger
update history
7 updates show details
date entered
2022-06-22
datestamp
2022-12-01

Publication (1)

  • Hadfield J, Harris SR, Seth-Smith HMB, Parmar S, Andersson P, Giffard PM, Schachter J, Moncada J, Ellison L, Vaulet MLG, Fermepin MR, Radebe F, Mendoza S, Ouburg S, MorrĂ© SA, Sachse K, Puolakkainen M, Korhonen SJ, Sonnex C, Wiggins R, Jalal H, Brunelli T, Casprini P, Pitt R, Ison C, Savicheva A, Shipitsyna E, Hadad R, Kari L, Burton MJ, Mabey D, Solomon AW, Lewis D, Marsh P, Unemo M, Clarke IN, Parkhill J, Thomson NR (2017). Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome Res 27:1220-1229

Sequence bin

contigs
313
total length
1,029,650 bp
max length
22,104 bp
mean length
3,290 bp
N50
5,951
L50
54
N90
1,547
L90
183
N95
976
L95
224
%GC
41.35
Ns
0
gaps
0
loci tagged
749

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
C. trachomatis cgMLST v1.081759372

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Chlamydia trachomatis Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia trachomatis 96%

Analysis performed: 2023-01-25

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Analysis: