Full information on isolate E_UK583638 (id:4814)

Provenance/primary metadata

id
4814
isolate
E_UK583638
species
Chlamydia trachomatis
genovar
E
country
UK
continent
Europe
year
2012
host
human
sex
male
source
urethra
bioproject accession
PRJEB2949 www.ebi.ac.uk
biosample accession
SAMEA2045109 www.ebi.ac.uk
ENA run accession
ERR658650 www.ebi.ac.uk
sender
Odile Harrison, University of Oxford, UK
curator
Auto Tagger
update history
8 updates show details
date entered
2022-06-22
datestamp
2022-12-01

Publication (1)

  • Hadfield J, Harris SR, Seth-Smith HMB, Parmar S, Andersson P, Giffard PM, Schachter J, Moncada J, Ellison L, Vaulet MLG, Fermepin MR, Radebe F, Mendoza S, Ouburg S, MorrĂ© SA, Sachse K, Puolakkainen M, Korhonen SJ, Sonnex C, Wiggins R, Jalal H, Brunelli T, Casprini P, Pitt R, Ison C, Savicheva A, Shipitsyna E, Hadad R, Kari L, Burton MJ, Mabey D, Solomon AW, Lewis D, Marsh P, Unemo M, Clarke IN, Parkhill J, Thomson NR (2017). Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome Res 27:1220-1229

Sequence bin

contigs
469
total length
1,019,641 bp
max length
15,045 bp
mean length
2,175 bp
N50
3,462
L50
88
N90
1,086
L90
298
N95
737
L95
354
%GC
41.27
Ns
0
gaps
0
loci tagged
619

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
C. trachomatis cgMLST v1.081749660

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Chlamydia trachomatis Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia trachomatis 100%

Analysis performed: 2023-01-25

Schemes and loci

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