Full information on isolate D_NL11 (id:4771)
Provenance/primary metadata
- id
- 4771
- isolate
- D_NL11
- species
- Chlamydia trachomatis
- genovar
- D
- country
- The Netherlands
- continent
- Europe
- year
- 2001
- host
- human
- sex
- female
- source
- endocervix
- bioproject accession
- PRJEB2035 www.ebi.ac.uk
- biosample accession
- SAMEA1483355 www.ebi.ac.uk
- ENA run accession
- ERR164677 www.ebi.ac.uk
- sender
- Odile Harrison, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 7 updates show details
- date entered
- 2022-06-17
- datestamp
- 2022-12-01
Publication (1)
- Hadfield J, Harris SR, Seth-Smith HMB, Parmar S, Andersson P, Giffard PM, Schachter J, Moncada J, Ellison L, Vaulet MLG, Fermepin MR, Radebe F, Mendoza S, Ouburg S, Morré SA, Sachse K, Puolakkainen M, Korhonen SJ, Sonnex C, Wiggins R, Jalal H, Brunelli T, Casprini P, Pitt R, Ison C, Savicheva A, Shipitsyna E, Hadad R, Kari L, Burton MJ, Mabey D, Solomon AW, Lewis D, Marsh P, Unemo M, Clarke IN, Parkhill J, Thomson NR (2017). Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome Res 27:1220-1229
Sequence bin
- contigs
- 80
- total length
- 1,794,677 bp
- max length
- 448,086 bp
- mean length
- 22,434 bp
- N50
- 208,584
- L50
- 3
- N90
- 83,165
- L90
- 9
- N95
- 33,575
- L95
- 10
- %GC
- 35.46
- Ns
- 0
- gaps
- 0
- loci tagged
- 982
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| C. trachomatis cgMLST v1.0 | 817 | 786 | 96 | |
Analysis
rMLST species identification
Analysis performed: 2023-01-25
Schemes and loci
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