Full information on isolate D_NL11 (id:4771)

Provenance/primary metadata

id
4771
isolate
D_NL11
species
Chlamydia trachomatis
genovar
D
country
The Netherlands
continent
Europe
year
2001
host
human
sex
female
source
endocervix
bioproject accession
PRJEB2035 www.ebi.ac.uk
biosample accession
SAMEA1483355 www.ebi.ac.uk
ENA run accession
ERR164677 www.ebi.ac.uk
sender
Odile Harrison, University of Oxford, UK
curator
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update history
7 updates show details
date entered
2022-06-17
datestamp
2022-12-01

Publication (1)

  • Hadfield J, Harris SR, Seth-Smith HMB, Parmar S, Andersson P, Giffard PM, Schachter J, Moncada J, Ellison L, Vaulet MLG, Fermepin MR, Radebe F, Mendoza S, Ouburg S, MorrĂ© SA, Sachse K, Puolakkainen M, Korhonen SJ, Sonnex C, Wiggins R, Jalal H, Brunelli T, Casprini P, Pitt R, Ison C, Savicheva A, Shipitsyna E, Hadad R, Kari L, Burton MJ, Mabey D, Solomon AW, Lewis D, Marsh P, Unemo M, Clarke IN, Parkhill J, Thomson NR (2017). Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome Res 27:1220-1229

Sequence bin

contigs
80
total length
1,794,677 bp
max length
448,086 bp
mean length
22,434 bp
N50
208,584
L50
3
N90
83,165
L90
9
N95
33,575
L95
10
%GC
35.46
Ns
0
gaps
0
loci tagged
982

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
C. trachomatis cgMLST v1.081778696

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Chlamydia trachomatis Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia trachomatis 51%
SPECIES Metamycoplasma hominis Tenericutes > [unclassified] > Mycoplasmoidales > Metamycoplasmataceae > Metamycoplasma > Metamycoplasma hominis 47%

Analysis performed: 2023-01-25

Schemes and loci

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