Full information on isolate F_6-94 (id:4744)
Provenance/primary metadata
- id
- 4744
- isolate
- F_6-94
- alias
- CP006673
- species
- Chlamydia trachomatis
- genovar
- F
- country
- USA
- continent
- North America
- host
- human
- bioproject accession
- PRJNA213111 www.ebi.ac.uk
- biosample accession
- SAMN02189831 www.ebi.ac.uk
- sender
- Odile Harrison, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 6 updates show details
- date entered
- 2022-06-08
- datestamp
- 2022-12-01
Publications (2)
- Hadfield J, Harris SR, Seth-Smith HMB, Parmar S, Andersson P, Giffard PM, Schachter J, Moncada J, Ellison L, Vaulet MLG, Fermepin MR, Radebe F, Mendoza S, Ouburg S, Morré SA, Sachse K, Puolakkainen M, Korhonen SJ, Sonnex C, Wiggins R, Jalal H, Brunelli T, Casprini P, Pitt R, Ison C, Savicheva A, Shipitsyna E, Hadad R, Kari L, Burton MJ, Mabey D, Solomon AW, Lewis D, Marsh P, Unemo M, Clarke IN, Parkhill J, Thomson NR (2017). Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome Res 27:1220-1229
- Putman TE, Suchland RJ, Ivanovitch JD, Rockey DD (2013). Culture-independent sequence analysis of Chlamydia trachomatis in urogenital specimens identifies regions of recombination and in-patient sequence mutations. Microbiology (Reading) 159:2109-2117
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| C. trachomatis cgMLST v1.0 | 817 | 767 | 93 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Chlamydia trachomatis | Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia trachomatis | 100% |
Analysis performed: 2023-01-25
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: