Full information on isolate F_6-94 (id:4744)

Provenance/primary metadata

id
4744
isolate
F_6-94
alias
CP006673
species
Chlamydia trachomatis
genovar
F
country
USA
continent
North America
host
human
bioproject accession
PRJNA213111 www.ebi.ac.uk
biosample accession
SAMN02189831 www.ebi.ac.uk
sender
Odile Harrison, University of Oxford, UK
curator
Auto Tagger
update history
6 updates show details
date entered
2022-06-08
datestamp
2022-12-01

Publications (2)

  • Hadfield J, Harris SR, Seth-Smith HMB, Parmar S, Andersson P, Giffard PM, Schachter J, Moncada J, Ellison L, Vaulet MLG, Fermepin MR, Radebe F, Mendoza S, Ouburg S, MorrĂ© SA, Sachse K, Puolakkainen M, Korhonen SJ, Sonnex C, Wiggins R, Jalal H, Brunelli T, Casprini P, Pitt R, Ison C, Savicheva A, Shipitsyna E, Hadad R, Kari L, Burton MJ, Mabey D, Solomon AW, Lewis D, Marsh P, Unemo M, Clarke IN, Parkhill J, Thomson NR (2017). Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome Res 27:1220-1229
  • Putman TE, Suchland RJ, Ivanovitch JD, Rockey DD (2013). Culture-independent sequence analysis of Chlamydia trachomatis in urogenital specimens identifies regions of recombination and in-patient sequence mutations. Microbiology (Reading) 159:2109-2117

Sequence bin

contigs
1
length
1,042,767 bp
%GC
41.31
Ns
5
gaps
4
loci tagged
952

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Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
C. trachomatis cgMLST v1.081776793

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Chlamydia trachomatis Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia trachomatis 100%

Analysis performed: 2023-01-25

Schemes and loci

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