Full information on isolate B21 (id:4408)

Provenance/primary metadata

id
4408
isolate
B21
species
Chlamydia pneumoniae
country
Australia
continent
Oceania
region
Bernier Island
year
2000
host
mammal
detailed host
Perameles bougainville
disease
conjunctivitis
comments
Chlamydia pneumoniae strain B21 isolated from a Western Barred Bandicoot (Perameles bougainville). Isolated from one of 37 animals from the Bernier Island or Dryandra conservation parks. Animals demonstrated conjunctivitis or audible lung sounds.
sender
Yvonne Pannekoek, Department of Medical Microbiology, Amsterdam UMC, University of Amsterdam, The Netherlands.
curator
Auto Tagger
update history
36 updates show details
date entered
2018-11-08
datestamp
2022-12-01

Sequence bin

contigs
165
total length
1,231,521 bp
max length
32,654 bp
mean length
7,464 bp
N50
12,354
L50
34
N90
4,164
L90
99
N95
2,766
L95
117
%GC
40.47
Ns
16
gaps
5
loci tagged
482

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
C. trachomatis cgMLST v1.081732840

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Chlamydia pneumoniae Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia pneumoniae 100%

Analysis performed: 2021-03-15

Schemes and loci

Tools

Export:
Analysis: