Full information on isolate B21 (id:4408)
Provenance/primary metadata
- id
- 4408
- isolate
- B21
- species
- Chlamydia pneumoniae
- country
- Australia
- continent
- Oceania
- region
- Bernier Island
- year
- 2000
- host
- mammal
- detailed host
- Perameles bougainville
- disease
- conjunctivitis
- comments
- Chlamydia pneumoniae strain B21 isolated from a Western Barred Bandicoot (Perameles bougainville). Isolated from one of 37 animals from the Bernier Island or Dryandra conservation parks. Animals demonstrated conjunctivitis or audible lung sounds.
- sender
- Yvonne Pannekoek, Department of Medical Microbiology, Amsterdam UMC, University of Amsterdam, The Netherlands.
- curator
- Auto Tagger
- update history
- 36 updates show details
- date entered
- 2018-11-08
- datestamp
- 2022-12-01
Sequence bin
- contigs
- 165
- total length
- 1,231,521 bp
- max length
- 32,654 bp
- mean length
- 7,464 bp
- N50
- 12,354
- L50
- 34
- N90
- 4,164
- L90
- 99
- N95
- 2,766
- L95
- 117
- %GC
- 40.47
- Ns
- 16
- gaps
- 5
- loci tagged
- 482
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| C. trachomatis cgMLST v1.0 | 817 | 328 | 40 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Chlamydia pneumoniae | Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia pneumoniae | 100% |
Analysis performed: 2021-03-15
Schemes and loci
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