Full information on isolate 19-23b (id:4401)
Provenance/primary metadata
- id
- 4401
- isolate
- 19-23b
- species
- Chlamydia suis
- country
- Switzerland
- continent
- Europe
- year
- 2013
- host
- mammal
- detailed host
- Pig
- source
- rectum
- comments
- GCA_900149375.2 ; porcine rectal swab; healthy
- sender
- Yvonne Pannekoek, Department of Medical Microbiology, Amsterdam UMC, University of Amsterdam, The Netherlands.
- curator
- Auto Tagger
- update history
- 28 updates show details
- date entered
- 2018-11-07
- datestamp
- 2022-12-01
Sequence bin
- contigs
- 344
- total length
- 1,045,494 bp
- max length
- 22,403 bp
- mean length
- 3,040 bp
- N50
- 4,313
- L50
- 74
- N90
- 1,552
- L90
- 229
- N95
- 1,054
- L95
- 268
- %GC
- 42.16
- Ns
- 0
- gaps
- 0
- loci tagged
- 647
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| C. trachomatis cgMLST v1.0 | 817 | 547 | 66 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Chlamydia suis | Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia suis | 76% |
Analysis performed: 2021-03-15
Schemes and loci
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