Full information on isolate 19-23b (id:4401)

Provenance/primary metadata

id
4401
isolate
19-23b
species
Chlamydia suis
country
Switzerland
continent
Europe
year
2013
host
mammal
detailed host
Pig
source
rectum
comments
GCA_900149375.2 ; porcine rectal swab; healthy
sender
Yvonne Pannekoek, Department of Medical Microbiology, Amsterdam UMC, University of Amsterdam, The Netherlands.
curator
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update history
28 updates show details
date entered
2018-11-07
datestamp
2022-12-01

Sequence bin

contigs
344
total length
1,045,494 bp
max length
22,403 bp
mean length
3,040 bp
N50
4,313
L50
74
N90
1,552
L90
229
N95
1,054
L95
268
%GC
42.16
Ns
0
gaps
0
loci tagged
647

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
C. trachomatis cgMLST v1.081754766

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Chlamydia suis Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia suis 76%

Analysis performed: 2021-03-15

Schemes and loci

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