Full information on isolate 162STDY5437302 (id:4351)
Provenance/primary metadata
- id
- 4351
- isolate
- 162STDY5437302
- species
- Chlamydia abortus
- country
- Unknown
- host
- unknown
- sender
- Yvonne Pannekoek, Department of Medical Microbiology, Amsterdam UMC, University of Amsterdam, The Netherlands.
- curator
- Auto Tagger
- update history
- 56 updates show details
- date entered
- 2018-11-05
- datestamp
- 2022-12-01
Sequence bin
- contigs
- 2,047
- total length
- 1,603,411 bp
- max length
- 16,848 bp
- mean length
- 784 bp
- N50
- 1,605
- L50
- 242
- N90
- 263
- L90
- 1,337
- N95
- 225
- L95
- 1,668
- %GC
- 43.28
- Ns
- 19391
- gaps
- 124
- loci tagged
- 848
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| C. trachomatis cgMLST v1.0 | 817 | 336 | 41 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Chlamydia abortus | Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia abortus | 100% |
Analysis performed: 2021-03-15
Schemes and loci
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