Full information on isolate 162STDY5437302 (id:4351)

Provenance/primary metadata

id
4351
isolate
162STDY5437302
species
Chlamydia abortus
country
Unknown
host
unknown
sender
Yvonne Pannekoek, Department of Medical Microbiology, Amsterdam UMC, University of Amsterdam, The Netherlands.
curator
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update history
56 updates show details
date entered
2018-11-05
datestamp
2022-12-01

Sequence bin

contigs
2,047
total length
1,603,411 bp
max length
16,848 bp
mean length
784 bp
N50
1,605
L50
242
N90
263
L90
1,337
N95
225
L95
1,668
%GC
43.28
Ns
19391
gaps
124
loci tagged
848

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
C. trachomatis cgMLST v1.081733641

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Chlamydia abortus Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia abortus 100%

Analysis performed: 2021-03-15

Schemes and loci

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