Full information on isolate S124_3A (id:4345)

Provenance/primary metadata

id
4345
isolate
S124_3A
species
Chlamydia abortus
country
UK
continent
Europe
region
Scotland
year
1982
host
mammal
detailed host
Sheep
comments
Aborted placenta
sender
Yvonne Pannekoek, Department of Medical Microbiology, Amsterdam UMC, University of Amsterdam, The Netherlands.
curator
Auto Tagger
update history
38 updates show details
date entered
2018-11-05
datestamp
2022-12-01

Publication (1)

  • Seth-Smith HMB, Busó LS, Livingstone M, Sait M, Harris SR, Aitchison KD, Vretou E, Siarkou VI, Laroucau K, Sachse K, Longbottom D, Thomson NR (2017). European Chlamydia abortus livestock isolate genomes reveal unusual stability and limited diversity, reflected in geographical signatures. BMC Genomics 18:344

Sequence bin

contigs
255
total length
1,267,596 bp
max length
162,066 bp
mean length
4,971 bp
N50
66,220
L50
7
N90
7,205
L90
23
N95
770
L95
63
%GC
40.18
Ns
16163
gaps
109
loci tagged
1,565

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
C. trachomatis cgMLST v1.081764478

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Chlamydia abortus Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia abortus 100%

Analysis performed: 2021-03-15

Schemes and loci

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