Full information on isolate S124_3A (id:4345)
Provenance/primary metadata
- id
- 4345
- isolate
- S124_3A
- species
- Chlamydia abortus
- country
- UK
- continent
- Europe
- region
- Scotland
- year
- 1982
- host
- mammal
- detailed host
- Sheep
- comments
- Aborted placenta
- sender
- Yvonne Pannekoek, Department of Medical Microbiology, Amsterdam UMC, University of Amsterdam, The Netherlands.
- curator
- Auto Tagger
- update history
- 38 updates show details
- date entered
- 2018-11-05
- datestamp
- 2022-12-01
Publication (1)
- Seth-Smith HMB, Busó LS, Livingstone M, Sait M, Harris SR, Aitchison KD, Vretou E, Siarkou VI, Laroucau K, Sachse K, Longbottom D, Thomson NR (2017). European Chlamydia abortus livestock isolate genomes reveal unusual stability and limited diversity, reflected in geographical signatures. BMC Genomics 18:344
Sequence bin
- contigs
- 255
- total length
- 1,267,596 bp
- max length
- 162,066 bp
- mean length
- 4,971 bp
- N50
- 66,220
- L50
- 7
- N90
- 7,205
- L90
- 23
- N95
- 770
- L95
- 63
- %GC
- 40.18
- Ns
- 16163
- gaps
- 109
- loci tagged
- 1,565
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| C. trachomatis cgMLST v1.0 | 817 | 644 | 78 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Chlamydia abortus | Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia abortus | 100% |
Analysis performed: 2021-03-15
Schemes and loci
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