Full information on isolate E_R29005 (id:226)
Provenance/primary metadata
- id
- 226
- isolate
- E_R29005
- species
- Chlamydia trachomatis
- genovar
- E
- country
- Russia
- continent
- Asia
- year
- 2010
- host
- human
- sex
- female
- source
- endocervix
- comments
- Lineage: T1
- bioproject accession
- PRJEB2035 www.ebi.ac.uk
- biosample accession
- SAMEA1398350 www.ebi.ac.uk
- ENA run accession
- ERR111630 www.ebi.ac.uk
- rMLST database accession
- 9461
- sender
- Keith Jolley, University of Oxford, UK
- curator
- Auto Tagger
- update history
- 31 updates show details
- date entered
- 2014-12-15
- datestamp
- 2022-12-01
Publication (1)
- Hadfield J, Harris SR, Seth-Smith HMB, Parmar S, Andersson P, Giffard PM, Schachter J, Moncada J, Ellison L, Vaulet MLG, Fermepin MR, Radebe F, Mendoza S, Ouburg S, Morré SA, Sachse K, Puolakkainen M, Korhonen SJ, Sonnex C, Wiggins R, Jalal H, Brunelli T, Casprini P, Pitt R, Ison C, Savicheva A, Shipitsyna E, Hadad R, Kari L, Burton MJ, Mabey D, Solomon AW, Lewis D, Marsh P, Unemo M, Clarke IN, Parkhill J, Thomson NR (2017). Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome Res 27:1220-1229
Sequence bin
- contigs
- 730
- total length
- 1,371,784 bp
- max length
- 87,899 bp
- mean length
- 1,880 bp
- N50
- 25,069
- L50
- 16
- N90
- 460
- L90
- 256
- N95
- 289
- L95
- 445
- %GC
- 42.33
- Ns
- 0
- gaps
- 0
- loci tagged
- 983
Annotation quality metrics
Scheme | Scheme loci | Designated loci | Annotation | |
---|---|---|---|---|
Score | Status | |||
C. trachomatis cgMLST v1.0 | 817 | 758 | 92 |
Analysis
rMLST species identification
Rank | Taxon | Taxonomy | Support | Matches |
---|---|---|---|---|
SPECIES | Chlamydia trachomatis | Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia trachomatis | 100% |
Analysis performed: 2023-01-25
Schemes and loci
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