Full information on isolate E_R29005 (id:226)

Provenance/primary metadata

id
226
isolate
E_R29005
species
Chlamydia trachomatis
genovar
E
country
Russia
continent
Asia
year
2010
host
human
sex
female
source
endocervix
comments
Lineage: T1
bioproject accession
PRJEB2035 www.ebi.ac.uk
biosample accession
SAMEA1398350 www.ebi.ac.uk
ENA run accession
ERR111630 www.ebi.ac.uk
rMLST database accession
9461
sender
Keith Jolley, University of Oxford, UK
curator
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update history
31 updates show details
date entered
2014-12-15
datestamp
2022-12-01

Publication (1)

  • Hadfield J, Harris SR, Seth-Smith HMB, Parmar S, Andersson P, Giffard PM, Schachter J, Moncada J, Ellison L, Vaulet MLG, Fermepin MR, Radebe F, Mendoza S, Ouburg S, MorrĂ© SA, Sachse K, Puolakkainen M, Korhonen SJ, Sonnex C, Wiggins R, Jalal H, Brunelli T, Casprini P, Pitt R, Ison C, Savicheva A, Shipitsyna E, Hadad R, Kari L, Burton MJ, Mabey D, Solomon AW, Lewis D, Marsh P, Unemo M, Clarke IN, Parkhill J, Thomson NR (2017). Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome Res 27:1220-1229

Sequence bin

contigs
730
total length
1,371,784 bp
max length
87,899 bp
mean length
1,880 bp
N50
25,069
L50
16
N90
460
L90
256
N95
289
L95
445
%GC
42.33
Ns
0
gaps
0
loci tagged
983

Show sequence bin

Annotation quality metrics

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
C. trachomatis cgMLST v1.081775892

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Chlamydia trachomatis Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia trachomatis 100%

Analysis performed: 2023-01-25

Schemes and loci

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