Full information on isolate 84-8471/1 (id:134)
Provenance/primary metadata
- id
- 134
- isolate
- 84-8471/1
- species
- Chlamydia psittaci
- country
- Unknown
- host
- bird
- detailed host
- Parrot
- rMLST database accession
- 70094
- sender
- Arie van der Ende, Department of Medical Microbiology, University of Amsterdam, Netherlands
- curator
- Auto Tagger
- update history
- 83 updates show details
- date entered
- 2012-07-25
- datestamp
- 2022-12-01
Sequence bin
- contigs
- 1,927
- total length
- 1,130,766 bp
- max length
- 7,579 bp
- mean length
- 587 bp
- N50
- 727
- L50
- 470
- N90
- 283
- L90
- 1,449
- N95
- 238
- L95
- 1,667
- %GC
- 39.60
- Ns
- 0
- gaps
- 0
- loci tagged
- 290
Annotation quality metrics
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| C. trachomatis cgMLST v1.0 | 817 | 137 | 16 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Chlamydia psittaci | Chlamydiae > Chlamydiia > Chlamydiales > Chlamydiaceae > Chlamydia > Chlamydia psittaci | 100% |
Analysis performed: 2021-09-06
Schemes and loci
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