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Download allele sequences

Select loci by scheme | Alphabetical list | All loci by scheme

cwp cluster genes

LocusDownloadTypeAllelesLength (setting)Min lengthMax length Curator(s) Last updated
CD2790 DNA26Variable: No limits set 708708K. Dingle, D. Griffiths2016-12-05
cwp2 DNA32Variable: No limits set 18721872K. Dingle, D. Griffiths2016-12-05
cwp66 DNA30Variable: No limits set 18262145K. Dingle, D. Griffiths2016-12-05
cwp84 DNA38Variable: No limits set 24122412K. Dingle, D. Griffiths2016-12-05
secA2 DNA30Variable: No limits set 23432346K. Dingle, D. Griffiths2016-12-05
slpA DNA276Variable: No limits set 17882328K. Dingle, D. Griffiths2016-12-05

MLST

LocusDownloadTypeAllelesLength (setting)Min lengthMax length Curator(s) Last updated
adk DNA56Fixed: 501 bp 501501K. Dingle, D. Griffiths2019-08-05
atpA DNA60Fixed: 555 bp 555555K. Dingle, D. Griffiths2019-08-07
dxr DNA60Fixed: 411 bp 411411K. Dingle, D. Griffiths2019-08-08
glyA DNA89Fixed: 516 bp 516516K. Dingle, D. Griffiths2019-08-08
recA DNA49Fixed: 564 bp 564564K. Dingle, D. Griffiths2019-08-05
sodA DNA70Variable: (449 min; 450 max) 449450K. Dingle, D. Griffiths2019-08-08
tpi DNA82Fixed: 504 bp 504504K. Dingle, D. Griffiths2019-08-05

Other loci

LocusDownloadTypeAllelesLength (setting)Min lengthMax length Full name/product Curator(s) Last updated
CD07810_1 DNA310Variable: No limits set 25682712K. Dingle2019-08-15
CD11480_3 DNA231Variable: No limits set 29792979K. Dingle2019-09-13
CD12290_2 DNA103Variable: No limits set 16651671K. Dingle2019-08-05
CD_RS02615_5 DNA45Variable: No limits set 20872097K. Dingle2019-08-05
CDspoVD_4 DNA101Variable: No limits set 19381980K. Dingle2019-08-05
cdtA DNA36Variable: No limits set 5181392K. Dingle, D. Griffiths2017-02-03
cdtB DNA55Variable: No limits set 15672631K. Dingle, D. Griffiths2017-02-03
cdtR DNA0Variable: No limits set K. Dingle, D. Griffiths
coa DNA9Variable: No limits set 645645K. Dingle, D. Griffiths2014-04-30
crf DNA0Variable: No limits set K. Dingle, D. Griffiths
DHFR DNA17Variable: No limits set 564566K. Dingle, D. Griffiths2014-03-06
ermB DNA25Variable: No limits set 738738K. Dingle, D. Griffiths2019-08-05
fliC DNA0Variable: No limits set K. Dingle, D. Griffiths
glpK DNA11Fixed: 561 bp 561561K. Dingle, D. Griffiths2008-07-22
gyrA DNA149Variable: No limits set 24272427K. Dingle, D. Griffiths2019-08-05
gyrB DNA127Variable: No limits set 19021902K. Dingle, D. Griffiths2019-08-05
rpoB DNA179Variable: No limits set 37173717K. Dingle, D. Griffiths2019-08-05
tcdB DNA22Fixed: 597 bp 597597K. Dingle, D. Griffiths2016-12-05
tcdC_complete DNA55Variable: No limits set 645717K. Dingle, D. Griffiths2014-03-19
tcdC_fragment DNA31Variable: No limits set 498570tcdC (fragment)K. Dingle, D. Griffiths2016-02-11
tcdE DNA0Variable: No limits set K. Dingle, D. Griffiths
tetM DNA58Variable: No limits set 19201920K. Dingle, D. Griffiths2019-09-13
treR DNA47Fixed: 723 bp 723723K. Dingle, D. Griffiths2018-01-08