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Download allele sequences

Select loci by scheme | Alphabetical list | All loci by scheme

cwp cluster genes

LocusDownloadTypeAllelesLength (setting)Min lengthMax length Curator(s) Last updated
CD2790 DNA26Variable: No limits set 708708K. Dingle, D. Griffiths2016-12-05
cwp2 DNA32Variable: No limits set 18721872K. Dingle, D. Griffiths2016-12-05
cwp66 DNA30Variable: No limits set 18262145K. Dingle, D. Griffiths2016-12-05
cwp84 DNA38Variable: No limits set 24122412K. Dingle, D. Griffiths2016-12-05
secA2 DNA30Variable: No limits set 23432346K. Dingle, D. Griffiths2016-12-05
slpA DNA276Variable: No limits set 17882328K. Dingle, D. Griffiths2016-12-05

MLST

LocusDownloadTypeAllelesLength (setting)Min lengthMax length Curator(s) Last updated
adk DNA61Fixed: 501 bp 501501K. Dingle, D. Griffiths2020-05-11
atpA DNA61Fixed: 555 bp 555555K. Dingle, D. Griffiths2019-10-30
dxr DNA62Fixed: 411 bp 411411K. Dingle, D. Griffiths2020-02-12
glyA DNA96Fixed: 516 bp 516516K. Dingle, D. Griffiths2020-05-18
recA DNA53Fixed: 564 bp 564564K. Dingle, D. Griffiths2020-05-18
sodA DNA77Variable: (449 min; 450 max) 449450K. Dingle, D. Griffiths2020-05-18
tpi DNA85Fixed: 504 bp 504504K. Dingle, D. Griffiths2020-05-11

Pathogenicity loci

LocusDownloadTypeAllelesLength (setting)Min lengthMax length Full name/product Curator(s) Last updated
tcdA DNA0Variable: No limits set K. Dingle
tcdB DNA0Variable: No limits set K. Dingle
tcdB_partial DNA23Fixed: 597 bp 597597tcdB (fragment)K. Dingle, D. Griffiths2020-07-10
tcdC DNA57Variable: No limits set 645717K. Dingle, D. Griffiths2020-07-13
tcdC_partial DNA31Variable: No limits set 498570tcdC (fragment)K. Dingle, D. Griffiths2016-02-11

Other loci

LocusDownloadTypeAllelesLength (setting)Min lengthMax length Full name/product Curator(s) Last updated
CD07810_1 DNA354Variable: No limits set 25682778K. Dingle2020-07-14
CD11480_3 DNA309Variable: No limits set 29792979K. Dingle2020-06-13
CD12290_2 DNA130Variable: No limits set 16651671K. Dingle2020-05-27
CD_RS02615_5 DNA50Variable: No limits set 20872097K. Dingle2020-05-25
CDspoVD_4 DNA124Variable: No limits set 19381980K. Dingle2019-09-28
cdtA DNA36Variable: No limits set 5181392K. Dingle, D. Griffiths2017-02-03
cdtB DNA55Variable: No limits set 15672631K. Dingle, D. Griffiths2017-02-03
cdtR DNA0Variable: No limits set K. Dingle, D. Griffiths
coa DNA9Variable: No limits set 645645K. Dingle, D. Griffiths2014-04-30
crf DNA0Variable: No limits set K. Dingle, D. Griffiths
DHFR DNA17Variable: No limits set 564566K. Dingle, D. Griffiths2014-03-06
ermB DNA29Variable: No limits set 738738K. Dingle, D. Griffiths2020-05-23
fliC DNA0Variable: No limits set K. Dingle, D. Griffiths
glpK DNA11Fixed: 561 bp 561561K. Dingle, D. Griffiths2008-07-22
gyrA DNA173Variable: No limits set 24272427K. Dingle, D. Griffiths2020-05-23
gyrB DNA146Variable: No limits set 19021902K. Dingle, D. Griffiths2020-07-13
rpoB DNA196Variable: No limits set 37173717K. Dingle, D. Griffiths2020-05-23
tcdE DNA0Variable: No limits set K. Dingle, D. Griffiths
tetM DNA59Variable: No limits set 19201920K. Dingle, D. Griffiths2020-03-24
treR DNA47Fixed: 723 bp 723723K. Dingle, D. Griffiths2018-01-08