Non jejuni/coli Campylobacter locus/sequence definitions database
The Non-jejuni/coli Campylobacter PubMLST sequence definition database contains allele and profile data representing the total known diversity of Campylobacter species other than jejuni and coli. Every new ST deposited in this database should have a corresponding record in the isolate database.
Query database
- Sequence query - query an allele sequence or genome.
- Batch sequence query - query multiple sequences in FASTA format.
- Sequence attribute search - find alleles by matching criteria (all loci together)
- Locus-specific sequence attribute search - select, analyse and download specific alleles.
- Search, browse or enter list of profiles
- Search by combinations of alleles - including partial matching.
- Batch profile query - lookup profiles copied from a spreadsheet.
Downloads
Option settings
Submissions
General information
- Number of sequences: 2,992
- Number of profiles: Show
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- C. concisus/curvus MLST: 130
- C. fetus MLST: 69
- C. helveticus MLST: 9
- C. hyointestinalis MLST: 133
- C. insulaenigrae MLST: 43
- C. lanienae MLST: 171
- C. lari MLST: 158
- C. sputorum MLST: 16
- C. upsaliensis MLST: 204
- Last updated: 2018-08-04
- Profile update history
- About BIGSdb
Analysis
- Sequence similarity - find sequences most similar to selected allele.
- Sequence comparison - display a comparison between two sequences.
- Locus Explorer - tool for analysing allele sequences stored for particular locus.