Search or browse database

Enter search criteria or leave blank to browse all records. Modify form parameters to filter or enter a list of values.

Isolate provenance/primary metadata fields

Display/sort options

Order by:
Display: records per page

Action Reset

Modify form parameters

Click to add or remove additional query terms:

Provenance fields
Secondary metadata
Allele designations/scheme field values
Allele designation counts
Allele designation status
Annotation status
Sequence bin
Tagged sequence counts
Tagged sequence status
Attribute values list
Filters

80,245 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields													MLST
id	isolate	aliases	country	year	month	isolation date	received date	disease	source	epidemiology	species	penner	aspA	glnA	gltA	glyA	pgm	tkt	uncA	ST	clonal complex
48	NCTC11168		UK	1977				gastroenteritis	human stool	sporadic case	Campylobacter jejuni	2	2	1	5	3	4	1	5	43	ST-21 complex
1220	81116	NCTC11828	UK	1981				gastroenteritis	human stool	general outbreak	Campylobacter jejuni		4	7	40	4	42	51	1	267	ST-283 complex
1481	81-176	CP000538	USA	1981					human stool	general outbreak	Campylobacter jejuni		1	2	3	27	5	9	3	604	ST-42 complex
1791	D5157	SRR1993469	USA	1995				gastroenteritis	human stool	general outbreak	Campylobacter jejuni	33	4	7	70	4	1	7	1	679	ST-45 complex
1793	D2643	SRR1993460	USA	1988				gastroenteritis	human stool	general outbreak	Campylobacter jejuni	1	2	1	1	3	2	1	6	8	ST-21 complex
1795	D2641	SRR1993629	USA	1988				gastroenteritis	human stool	general outbreak	Campylobacter jejuni	1	2	1	1	3	2	1	6	8	ST-21 complex
1796	D2651	SRR1993461	USA	1988				gastroenteritis	human stool	general outbreak	Campylobacter jejuni	1	2	1	1	3	2	1	6	8	ST-21 complex
1797	D2763	SRR1993463	USA	1989				gastroenteritis	human stool	general outbreak	Campylobacter jejuni	2	2	1	1	3	2	1	6	8	ST-21 complex
1798	D2770	SRR1993314	USA	1989				gastroenteritis	human stool	general outbreak	Campylobacter jejuni	2	2	1	1	3	2	1	6	8	ST-21 complex
1799	D2769	SRR1993313	USA	1989				gastroenteritis	human stool	general outbreak	Campylobacter jejuni	2	2	1	1	3	2	1	6	8	ST-21 complex
1802	D1117	SRR1993455	USA	1983				gastroenteritis	human stool	general outbreak	Campylobacter jejuni	2	2	1	1	3	2	1	5	21	ST-21 complex
1806	D0226	SRR1993341	USA	1982				gastroenteritis	human stool	general outbreak	Campylobacter jejuni	2	2	1	1	3	2	1	5	21	ST-21 complex
1808	D2287	SRR1993459	USA	1986				gastroenteritis	human stool	general outbreak	Campylobacter jejuni	4	2	1	1	3	2	1	5	21	ST-21 complex
1810	D2261	SRR1993458	USA	1986				gastroenteritis	human stool	sporadic case	Campylobacter jejuni	2	2	1	1	3	2	1	5	21	ST-21 complex
1811	D2669	SRR1993462	USA	1988				gastroenteritis	human stool	general outbreak	Campylobacter jejuni	2	2	1	1	3	2	1	5	21	ST-21 complex
1818	D5476	SRR1993471	USA	1998				gastroenteritis	human stool	general outbreak	Campylobacter jejuni	19	1	3	6	4	3	3	3	22	ST-22 complex
1820	D0445	SRR1993342	USA	1983				gastroenteritis	human stool	general outbreak	Campylobacter jejuni	19	1	3	6	4	3	3	3	22	ST-22 complex
1825	D5163	SRR1993470	USA	1995				gastroenteritis	human stool	general outbreak	Campylobacter jejuni	41	16	2	16	62	3	9	8	41	ST-41 complex
1828	EDL22	SRR1975111	USA	1981				gastroenteritis	human stool	general outbreak	Campylobacter jejuni	22,23,36	1	2	3	4	5	9	3	42	ST-42 complex
1840	D2256	SRR1993457	USA	1986				gastroenteritis	human stool	general outbreak	Campylobacter jejuni	55	4	7	10	4	1	7	1	45	ST-45 complex
1844	D5478	SRR1999652	USA	1998				gastroenteritis	human stool	sporadic case	Campylobacter jejuni	4	2	4	1	2	7	1	5	48	ST-48 complex
1850	D2253	SRR1993456	USA					gastroenteritis	human stool	sporadic case	Campylobacter jejuni	4	6	4	5	2	2	1	5	122	ST-206 complex
2245	00-1597		Canada	2000				gastroenteritis	human stool	sporadic case	Campylobacter jejuni	9, 37	7	2	5	3	3	2	6	930
2473	RM4661	NADC 9175	USA	2003					turkey		Campylobacter coli		103	110	30	162	188	164	99	1135
2604	H142940463		UK [England]	2014	7	2014-07-16		gastroenteritis	other animal	environmental isolate	Campylobacter coli		81	104	425	113	143	43	67	7346

Analysis tools

Breakdown:

Analysis:

Export:

linked to any publication
not linked to any publication
Amadi et al. 2017 Foodborne Pathog Dis 14:419-425
Amar et al. 2014 Vet Microbiol 168:124-30
Baily et al. 2015 Mol Ecol 24:208-221
Bessell et al. 2012 BMC Infect Dis 12:80
Bianchini et al. 2014 Int J Environ Res Public Health 11:7154-7162
Biggs et al. 2011 PLoS One 6:e27121
Birkhead et al. 1988 J Infect Dis 157:1095-7
Brathwaite et al. 2013 Genome Announc 1:
Bravo et al. 2020 Microbiol Resour Announc 9:
Bravo et al. 2020 Microbiol Resour Announc 9:
Brown et al. 2015 PLoS One 10:e0121680
Cha et al. 2014 Jpn J Infect Dis 67:490-494
Cha et al. 2016 Front Microbiol 7:589
Cha et al. 2017 Front Microbiol 8:818
Chen et al. 2013 Antimicrob Agents Chemother 57:5398-405
Clark et al. 2014 BMC Microbiol 14:70
Clark et al. 2014 PLoS One 9:e95349
Clark et al. 2016 BMC Genomics 17:990
Cody et al. 2009 Microbiology 155:4145-54
Cody et al. 2012 J Clin Microbiol 50:3193-201
Cody et al. 2013 J Clin Microbiol 51:2526-34
Cody et al. 2015 Environ Microbiol Rep 7:782-8
Cody et al. 2017 J Clin Microbiol 55:2086-2097
Collado et al. 2018 Infect Genet Evol 58:290-293
Colles et al. 2003 Appl Environ Microbiol 69:7409-13
Colles et al. 2008 Appl Environ Microbiol 74:3583-90
Colles et al. 2008 Environ Microbiol 10:2042-50
Colles et al. 2009 Environ Microbiol 11:258-67
Colles et al. 2010 Int J Food Microbiol 137:259-64
Colles et al. 2011 Environ Microbiol Rep 3:574-580
Colles et al. 2011 PLoS One 6:e22825
Colles et al. 2015 Environ Microbiol 17:938-46
Cooper et al. 2011 J Bacteriol 193:1491-2
Corcionivoschi et al. 2015 Gut Pathog 7:20
D'Mello et al. 2014 J Microencapsul 31:137-46
de Haan et al. 2010 Appl Environ Microbiol 76:5228-36
Dearlove et al. 2016 ISME J 10:721-9
Di Giannatale et al. 2016 Front Microbiol 7:887
Dingle et al. 2001 J Clin Microbiol 39:14-23
Dingle et al. 2001 J Clin Microbiol 39:3346-9
Dingle et al. 2002 Emerg Infect Dis 8:949-55
Dingle et al. 2005 J Clin Microbiol 43:340-7
Dingle et al. 2008 Emerg Infect Dis 14:1620-2
Duarte et al. 2014 Int J Antimicrob Agents 44:306-13
Duim et al. 2003 J Clin Microbiol 41:5593-7
Dutta et al. 2016 Genome Announc 4:
Egger et al. 2012 Vet Microbiol 155:272-8
Elhadidy et al. 2018 Int J Food Microbiol 275:66-75
Engberg et al. 2001 J Infect Dis 184:215-20
Erich Zautner et al. 2015 Sci Rep 5:13431
Fitch et al. 2005 J Clin Microbiol 43:4221-4
Fitzgerald et al. 2001 J Clin Microbiol 39:2386-90
Fouts et al. 2005 PLoS Biol 3:e15
Friedrich et al. 2016 Epidemiol Infect 144:820-8
Friis et al. 2010 PLoS One 5:e12253
Graham et al. 2016 Environ Microbiol Rep 8:382-7
Griekspoor et al. 2013 Mol Ecol 22:1463-72
Griekspoor et al. 2015 Vet Microbiol 178:94-8
Gripp et al. 2011 BMC Genomics 12:584
Gundogdu et al. 2007 BMC Genomics 8:162
Guyard-Nicodème et al. 2015 Int J Food Microbiol 203:8-14
He et al. 2015 Genome Announc 3:
Hepworth et al. 2011 Environ Microbiol 13:1549-60
Hofreuter et al. 2006 Infect Immun 74:4694-707
Holmberg et al. 2015 Acta Vet Scand 57:19
Hooton et al. 2014 Front Microbiol 5:744
Hudson et al. 1984 J Infect Dis 150:789
Jacobs-Reitsma et al. 1994 Poult Sci 73:1260-6
Jorgensen et al. 2011 Appl Environ Microbiol 77:3741-8
Karmali et al. 1979 J Pediatr 94:527-33
Keller et al. 2014 J Wildl Dis 50:31-41
Kinana et al. 2006 Appl Environ Microbiol 72:3309-13
Kittl et al. 2011 J Appl Microbiol 110:513-520
Kittl et al. 2013 Appl Environ Microbiol 79:3875-8
Kittl et al. 2013 PLoS One 8:e81796
Kornblatt et al. 1985 Am J Epidemiol 122:884-9
Kovac et al. 2018 Zoonoses Public Health 65:51-58
Kovanen et al. 2014 J Appl Microbiol 117:249-257
Kovanen et al. 2016 Int J Food Microbiol 226:53-60
Kovanen et al. 2019 Appl Environ Microbiol 85:
Kovač et al. 2014 Epidemiol Infect 142:2595-603
Kovač et al. 2015 Front Microbiol 6:1169
Lefébure et al. 2010 Genome Biol Evol 2:646-55
Liu et al. 2016 Genom Data 8:123-5
Liu et al. 2017 Vet Microbiol 204:20-24
Llarena et al. 2015 PLoS One 10:e0116585
Llarena et al. 2015 Zoonoses Public Health 62:209-221
Llarena et al. 2016 Microb Genom 2:e000088
Lucarelli et al. 2016 Foodborne Pathog Dis 13:490-4
Lévesque et al. 2008 J Clin Microbiol 46:3404-11
Lévesque et al. 2011 PLoS One 6:e16167
Lévesque et al. 2012 Appl Environ Microbiol 78:2470-3
Lévesque et al. 2013 PLoS One 8:e83731
Manfreda et al. 2016 Foodborne Pathog Dis 13:93-100
Manning et al. 2003 Appl Environ Microbiol 69:6370-9
McCarthy et al. 2007 Emerg Infect Dis 13:267-72
McCarthy et al. 2012 Epidemiol Infect 140:2247-55
McTavish et al. 2008 Epidemiol Infect 136:1244-52
Mikulić et al. 2016 Food Technol Biotechnol 54:475-481
Miller et al. 2006 Microbiology 152:245-55
Mohan 2015 BMC Res Notes 8:1
Mossong et al. 2016 Sci Rep 6:20939
Mullner et al. 2010 Epidemiol Infect 138:1372-83
Mäesaar et al. 2019 Poult Sci 98:1610-1614
Nennig et al. 2020 Front Cell Infect Microbiol 10:608020
Ngulukun et al. 2016 J Appl Microbiol 121:561-8
Nguyen et al. 2016 Gut Pathog 8:19
Niederer et al. 2012 Appl Environ Microbiol 78:288-91
Nilsson et al. 2017 PLoS One 12:e0189222
Nohra et al. 2016 Appl Environ Microbiol 82:4363-70
Oh et al. 2017 J Microbiol 55:13-20
Olkkola et al. 2015 PLoS One 10:e0132660
Olkkola et al. 2016 Microbiology 162:1157-66
Ortolani et al. 1979 Exp Cell Res 122:137-47
Oyarzabal et al. 2008 J Appl Microbiol 105:800-12
Ozawa et al. 2016 Foodborne Pathog Dis 13:1-7
Parker et al. 2007 BMC Microbiol 7:50
Parker et al. 2016 Genome Announc 4:
Parkhill et al. 2000 Nature 403:665-8
Parsons et al. 2009 J Clin Microbiol 47:3466-71
Pascoe et al. 2017 Mol Ecol 26:4497-4508
Pearson et al. 2007 J Bacteriol 189:8402-3
Pearson et al. 2013 Genome Announc 1:
Pearson et al. 2015 Genome Biol Evol 7:2663-79
Piccirillo et al. 2014 New Microbiol 37:557-562
Poly et al. 2008 Infect Immun 76:5655-67
Prachantasena et al. 2016 PLoS One 11:e0149585
Ragimbeau et al. 2008 Appl Environ Microbiol 74:7715-22
Ragimbeau et al. 2014 BMC Microbiol 14:205
Revez et al. 2014 BMC Genomics 15:768
Revez et al. 2014 J Clin Microbiol 52:2782-6
Rodríguez-Martínez et al. 2013 Environ Res 127:56-62
Roels et al. 1998 Epidemiol Infect 121:281-7
Rosner et al. 2017 Sci Rep 7:5139
Sacks et al. 1986 Am J Public Health 76:424-8
Sahin et al. 2008 J Clin Microbiol 46:1663-71
Sanad et al. 2011 PLoS One 6:e25778
Sanad et al. 2013 Foodborne Pathog Dis 10:229-36
Sen et al. 2018 Appl Environ Microbiol 84:
Sheppard et al. 2009 Clin Infect Dis 48:1072-8
Sheppard et al. 2009 Int J Food Microbiol 134:96-103
Sheppard et al. 2010 Appl Environ Microbiol 76:5269-77
Sheppard et al. 2013 Mol Ecol 22:1051-64
Sheppard et al. 2013 Proc Natl Acad Sci U S A 110:11923-7
Sheppard et al. 2014 Mol Ecol 23:2442-51
Shyaka et al. 2015 Genome Announc 3:
Skarp et al. 2017 Int J Med Microbiol 307:233-240
Strachan et al. 2009 J Infect Dis 199:1205-8
Tang et al. 2017 Sci Rep 7:494
Taveirne et al. 2014 Genome Announc 2:
Taveirne et al. 2017 Genome Announc 5:
Thakur et al. 2005 J Clin Microbiol 43:5705-14
Thépault et al. 2017 Appl Environ Microbiol 83:
Ugarte-Ruiz et al. 2015 Zoonoses Public Health 62:497-500
Vasco et al. 2016 Appl Environ Microbiol 82:4218-24
Vegge et al. 2016 Front Microbiol 7:1877
Vinueza-Burgos et al. 2017 Poult Sci 96:2366-2374
Vogt et al. 1984 J Clin Microbiol 20:998-1000
Wei et al. 2015 Int J Antimicrob Agents 45:197-8
Wei et al. 2019 Transbound Emerg Dis 66:56-65
Weis et al. 2016 Genome Announc 4:
Weis et al. 2017 Genome Announc 5:
Wieczorek et al. 2017 Poult Sci 96:703-709
Wieczorek et al. 2018 Microb Drug Resist 24:680-684
Wilson et al. 2008 PLoS Genet 4:e1000203
Wirz et al. 2010 Appl Environ Microbiol 76:6377-86
Yahara et al. 2017 Environ Microbiol 19:361-380
Yamazaki et al. 2016 J Appl Microbiol 120:1711-22
Zautner et al. 2011 Appl Environ Microbiol 77:2359-65
Zautner et al. 2012 BMC Microbiol 12:171
Zautner et al. 2013 BMC Microbiol 13:247
Zeng et al. 2016 J Food Sci 81:M106-13
Zhang et al. 2010 Foodborne Pathog Dis 7:913-9
Zhang et al. 2010 PLoS One 5:e15060
Zhang et al. 2015 Curr Microbiol 71:341-6
Zhang et al. 2015 J Clin Microbiol 53:1765-7
Zhang et al. 2016 J Appl Microbiol 121:287-293
Zhao et al. 2015 Appl Environ Microbiol 82:459-66
Zhao et al. 2015 J Antimicrob Chemother 70:1314-21

belonging to any project
not belonging to any project
1998-2018 UK human isolates (n=10,359)
APHA pig survey - excluded isolates
Attribution
AVT
CC353_Reclassification_project
C. coli Attribution dataset
C. coli test full
C. coli test refined
Cjd
C. jejuni attribution dataset
C. jejuni test full
C. jejuni test refined
Danish
FS101013_Ccoli_attribution_ref_dataset
FS101013_Ccoli_isolates_for_attribution
FS101013 Chicken caecal pool isolates
FS101013 Chicken carcass isolates
FS101013_Cjejuni_attribution_ref_dataset
FS101013_Cjejuni_isolates_forattribution
FS101013-dup/poor quality
FS101013 NWC C. coli for attribution
FS101013 NWC C. jejuni for attribution
FS101013 NWC Human Surveillance Yr1
FS101013 NWC Human Surveillance Yr1 dd
FS101013 NWC Human Surveillance Yr2
FS101013 NWC Human Surveillance Yr2 dd
FS101013 NWC Human Surveillance Yr3
FS101013 NWC Human Surveillance Yr3 dd
FS101013 OXC C.coli for attribution
FS101013 OXC C. jejuni for attribution
FS101013 OXC Human surveillance 2003-04
FS101013 OXC Human surveillance 2003-4dd
FS101013 OXC Human Surveillance 2006-07
FS101013 OXC Human Surveillance2006-07dd
FS101013 OXC Human Surveillance Yr1
FS101013 OXC Human Surveillance Yr1 dd
FS101013 OXC Human Surveillance Yr2
FS101013 OXC Human Surveillance Yr2 dd
FS101013 OXC Human Surveillance Yr3 dd
FS101013 OXC Human Surveillence Yr3
FS101013_OXC_Long_Ccoli
FS101013_OXC_Long_Cjejuni
FS101013 PHE Historical isolates 1997-98
FS101013 pig abattoir survey
FS101013 PubMLST WGS C. coli isolates
FS101013 PubMLST WGS C. jejuni isolates
FS101013 Retail Food Isolates
FS101013-WGS from mixed cultures
FSA Campylobacter coli
FSA-FS101013 C. coli
FSA-FS101013 C. jejuni
FSA PATH-SAFE
HPA_Year
mapA/ceuE Evaluation
ML to predict source of C. jejuni
Oxfordshire FSA Human Surveillance
Oxfordshire Human Surveillance
Oxfordshire Human Surveillance C. coli
Oxfordshire Human Surveillance C. jejuni
Oxfordshire Human Surveillance YR1
Oxfordshire Human Surveillance YR1_dedup
Oxfordshire Human Surveillance YR2
Oxfordshire Human Surveillance YR2_dedup
Oxfordshire Human Surveillance YR3
Oxfordshire Human Surveillance YR3_dedup
Oxfordshire Human Surveillance YR4
Oxfordshire Human Surveillance YR4_dedup
Oxfordshire Human Surveillance YR5
PNT
Reading
Third yr practical: final dataset
Third yr practical: test dataset