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Isolate fields													MLST
id	isolate	aliases	country	year	month	isolation date	received date	disease	source	epidemiology	species	penner	aspA	glnA	gltA	glyA	pgm	tkt	uncA	ST	clonal complex
1220	81116	NCTC11828	UK	1981				gastroenteritis	human stool	general outbreak	Campylobacter jejuni		4	7	40	4	42	51	1	267	ST-283 complex
80402	npCAMPY27		Peru	2013	6	2013-06-22	2013-06-22	carrier	human stool	carrier	Campylobacter jejuni		4	7	40	4	42	51	1	267	ST-283 complex

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belonging to any project
not belonging to any project
1998-2018 UK human isolates (n=10,359)
APHA pig survey - excluded isolates
Attribution
AVT
CC353_Reclassification_project
C. coli Attribution dataset
C. coli test full
C. coli test refined
Cjd
C. jejuni attribution dataset
C. jejuni test full
C. jejuni test refined
Danish
FS101013_Ccoli_attribution_ref_dataset
FS101013_Ccoli_isolates_for_attribution
FS101013 Chicken caecal pool isolates
FS101013 Chicken carcass isolates
FS101013_Cjejuni_attribution_ref_dataset
FS101013_Cjejuni_isolates_forattribution
FS101013-dup/poor quality
FS101013 NWC C. coli for attribution
FS101013 NWC C. jejuni for attribution
FS101013 NWC Human Surveillance Yr1
FS101013 NWC Human Surveillance Yr1 dd
FS101013 NWC Human Surveillance Yr2
FS101013 NWC Human Surveillance Yr2 dd
FS101013 NWC Human Surveillance Yr3
FS101013 NWC Human Surveillance Yr3 dd
FS101013 OXC C.coli for attribution
FS101013 OXC C. jejuni for attribution
FS101013 OXC Human surveillance 2003-04
FS101013 OXC Human surveillance 2003-4dd
FS101013 OXC Human Surveillance 2006-07
FS101013 OXC Human Surveillance2006-07dd
FS101013 OXC Human Surveillance Yr1
FS101013 OXC Human Surveillance Yr1 dd
FS101013 OXC Human Surveillance Yr2
FS101013 OXC Human Surveillance Yr2 dd
FS101013 OXC Human Surveillance Yr3 dd
FS101013 OXC Human Surveillence Yr3
FS101013_OXC_Long_Ccoli
FS101013_OXC_Long_Cjejuni
FS101013 PHE Historical isolates 1997-98
FS101013 pig abattoir survey
FS101013 PubMLST WGS C. coli isolates
FS101013 PubMLST WGS C. jejuni isolates
FS101013 Retail Food Isolates
FS101013-WGS from mixed cultures
FSA Campylobacter coli
FSA-FS101013 C. coli
FSA-FS101013 C. jejuni
HPA_Year
mapA/ceuE Evaluation
ML to predict source of C. jejuni
Oxfordshire FSA Human Surveillance
Oxfordshire Human Surveillance
Oxfordshire Human Surveillance C. coli
Oxfordshire Human Surveillance C. jejuni
Oxfordshire Human Surveillance YR1
Oxfordshire Human Surveillance YR1_dedup
Oxfordshire Human Surveillance YR2
Oxfordshire Human Surveillance YR2_dedup
Oxfordshire Human Surveillance YR3
Oxfordshire Human Surveillance YR3_dedup
Oxfordshire Human Surveillance YR4
Oxfordshire Human Surveillance YR4_dedup
Oxfordshire Human Surveillance YR5
PNT
Reading
Third yr practical: final dataset
Third yr practical: test dataset