Main projects defined in the Campylobacter jejuni/coli isolates database

Project idShort descriptionFull descriptionIsolatesBrowse
1Oxfordshire Human Surveillance
Defra FSA

This isolate is part of the sentinel surveillance scheme for human Campylobacteriosis in Oxfordshire which is a collaborative project between The Wellcome Trust Sanger Institute and The University of Oxford, funded by The Department for Environment, Food and Rural Affairs and The Food Standards Agency.

Use of Oxfordshire sentinel surveillance data must be cited in any publication or presentation making use of it.

9705
5Oxfordshire Human Surveillance YR1929 Yr1 WGS isolates with complete MLST profiles937
9Oxfordshire Human Surveillance YR2DEFRA/FSA Oxfordshire human surveillance isolates.865
10FS101013 PHE Historical isolates 1997-98This project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains UK historical clinical isolates obtained between 1997 - 1998.479
14Oxfordshire Human Surveillance YR3875
18Oxfordshire Human Surveillance YR1_dedup879
20Oxfordshire Human Surveillance YR2_dedupDEFRA/FSA Oxfordshire Human Surveillance Year 2 isolates_de-duplicated847
21Oxfordshire Human Surveillance YR3_dedupDEFRA/FSA Oxfordshire Human Surveillance Year 3 isolates_de-duplicated830
22Oxfordshire Human Surveillance YR4DEFRA/FSA Oxfordshire human surveillance isolates July 2014 - June 2015721
24Oxfordshire Human Surveillance YR4_dedupDEFRA/FSA Oxfordshire human surveillance isolates July 2014 - March 2015 de-duplicated499
25C. jejuni attribution datasetC. jejuni isolates for attribution analyses.9373
26C. coli Attribution datasetC. coli isolates for attribution analyses.4020
28Oxfordshire FSA Human SurveillanceThis isolate is part of the Food Standards Agency funded project for enhanced molecular-based (MLST/wgMLST) surveillance and source attribution of human Campylobacter, in the UK.1718
29FSA Campylobacter coliFood Standards Agency funded project for generating tools for the molecular epidemiology of Campylobacter coli by next generation genome sequencing506
31FS101013 Chicken carcass isolatesThis project is part of the UK Food Standards Agency funded project FSA-FS101013. Chicken carcass isolates collected at abattoir.1078
34FS101013 Chicken caecal pool isolatesThis project is part of the UK Food Standards Agency funded project FSA-FS101013. Pooled chicken caecal isolates collected at abattoir.334
38FS101013 pig abattoir surveyThis project is part of the UK Food Standards Agency funded project FSA-FS101013. Pig abattoir isolates.78
39FS101013 NWC Human Surveillance Yr1This project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains all clinical isolates from Newcastle and North Tyneside, obtained between October 2015 - September 2016.916
40FS101013 OXC Human Surveillance Yr1This project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains all clinical isolates from Oxfordshire, obtained between October 2015 - September 2016.461
41FS101013 NWC Human Surveillance Yr1 ddThis project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains clinical isolates from Newcastle and North Tyneside, obtained between October 2015 - September 2016, from which patient replicate samples have been excluded.887
42FS101013 OXC Human Surveillance Yr1 ddThis project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains clinical isolates from Oxfordshire, obtained between October 2015 - September 2016, from which patient replicate samples have been excluded.441
46FS101013 NWC Human Surveillance Yr2This project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains all clinical isolates from Newcastle and North Tyneside, obtained between October 2016 - September 2017.804
47FS101013 NWC Human Surveillance Yr2 ddThis project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains clinical isolates from Newcastle and North Tyneside, obtained between October 2016 - September 2017, from which patient replicate samples have been excluded.776
48FS101013 OXC Human Surveillance Yr2This project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains all clinical isolates from Oxfordshire, obtained between October 2016 - September 2017.618
49FS101013 OXC Human Surveillance Yr2 ddThis project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains clinical isolates from Oxfordshire, obtained between October 2016 - September 2017, from which patient replicate samples have been excluded.588
52FS101013 Retail Food IsolatesThis project is part of the UK Food Standards Agency funded project FSA-FS101013. Isolates from retail chicken, duck, turkey, beef or lamb offal or meat.835
53FS101013 NWC Human Surveillance Yr3This project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains all clinical isolates from Newcastle and North Tyneside, obtained between October 2017 - September 2018.828
54FS101013 NWC Human Surveillance Yr3 ddThis project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains clinical isolates from Newcastle and North Tyneside, obtained between October 2017 - September 2018, from which patient replicate samples have been excluded.808
55FS101013 OXC Human Surveillence Yr3This project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains all clinical isolates from Newcastle and North Tyneside, obtained between October 2017 - September 2018.640
56FS101013 OXC Human Surveillance Yr3 ddThis project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains clinical isolates from Oxfordshire, obtained between October 2017 - September 2018, from which patient replicate samples have been excluded.621
64FS101013 OXC Human Surveillance 2006-07This project is part of the UK Food Standards Agency funded project FSA-FS101013. Clinical isolates from Oxfordshire human surveillance between mid-September 2006 and mid-September 2007.568
66FS101013_Ccoli_attribution_ref_datasetThis project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains reference C. coli isolates from poultry, ruminants and pigs for clinical source attribution.3521
67FS101013_Cjejuni_attribution_ref_datasetThis project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains reference C. jejuni isolates from chicken, ruminants and wild birds for clinical source attribution.7715
68FS101013_Ccoli_isolates_for_attributionThis project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains clinical C. coli isolates from 2015-2018 for attribution to probable source.399
69FS101013_Cjejuni_isolates_forattributionThis project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains clinical C. jejuni isolates for attribution to probable source.3885
70FS101013_OXC_Long_CcoliThis project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains Oxfordshire clinical C. coli isolates from 2003 - 2018, for attribution to probable source.922
71FS101013_OXC_Long_CjejuniThis project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains Oxfordshire clinical C. jejuni isolates from 2003 - 2018, for attribution to probable source.8750
72FS101013 OXC Human surveillance 2003-04This project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains all clinical isolates from Oxfordshire human surveillance between mid-September 2003 and mid-September 2004.447
73FS101013 OXC Human surveillance 2003-4ddThis project is part of the UK Food Standards Agency funded project FSA-FS101013.The project contains all clinical isolates from Oxfordshire human surveillance between mid-September 2003 and mid-September 2004, from which patient replicate samples have been excluded.429
74FS101013 OXC Human Surveillance2006-07ddThis project is part of the UK Food Standards Agency funded project FSA-FS101013. Clinical isolates from Oxfordshire human surveillance between mid-September 2006 and mid-September 2007, from which patient replicate samples have been excluded.552
75FS101013 OXC C.coli for attributionThis project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains clinical C. coli isolates from Oxfordshire between 2015-2018 for attribution to probable source.156
76FS101013 OXC C. jejuni for attributionThis project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains clinical C. jejuni isolates from Oxfordshire between 2015-2018 for attribution to probable source.1590
77FS101013 NWC C. coli for attributionThis project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains clinical C. coli isolates from Newcastle and North Tyneside between 2015-2018 for attribution to probable source.243
78FS101013 NWC C. jejuni for attributionThis project is part of the UK Food Standards Agency funded project FSA-FS101013. The project contains clinical C. jejuni isolates from Oxfordshire between 2015-2018 for attribution to probable source.2295
79FS101013 PubMLST WGS C. coli isolatesThis project is part of the UK Food Standards Agency funded project FSA-FS101013. Genome sequenced C. coli isolates from animals and foods to develop a whole genome sequence reference database from important sources of human infection1323
80FS101013 PubMLST WGS C. jejuni isolatesThis project is part of the UK Food Standards Agency funded project FSA-FS101013. Genome sequenced C. jejuni isolates from animals and foods to develop a whole genome sequence reference database from important sources of human infection4944