Full information on isolate Turkey1 (id:82)
Provenance/primary metadata
- id
- 82
- isolate
- Turkey1
- country
- Turkey
- continent
- Asia
- source
- animal
- animal source
- horse
- disease
- glanders
Tracking
- sender
- Sandra APPELT, Robert Koch Institute
- curator
- Auto Tagger
- update history
- 3 updates show details
- date entered
- 2022-08-11
- datestamp
- 2022-10-06
Sequence bin
- contigs
- 244
- total length
- 5,455,153 bp
- max length
- 121,229 bp
- mean length
- 22,358 bp
- N50
- 37,084
- L50
- 45
- N90
- 13,473
- L90
- 138
- N95
- 8,786
- L95
- 162
- %GC
- 68.59
- Ns
- 0
- gaps
- 0
- loci tagged
- 3,249
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| Bm_cgc_50 | cgMLST | Single-linkage | 50 | experimental | 11 (17 isolates) |
| Bm_cgc_25 | cgMLST | Single-linkage | 25 | experimental | 11 (17 isolates) |
| Bm_cgc_10 | cgMLST | Single-linkage | 10 | experimental | 31 (16 isolates) |
| Bm_cgc_5 | cgMLST | Single-linkage | 5 | experimental | 34 (8 isolates) |
| Bm_cgc_3 | cgMLST | Single-linkage | 3 | experimental | 37 (6 isolates) |
| Bm_cgc_50 | cgMLST | Single-linkage | 50 | experimental | 11 (17 isolates) |
| Bm_cgc_25 | cgMLST | Single-linkage | 25 | experimental | 11 (17 isolates) |
| Bm_cgc_10 | cgMLST | Single-linkage | 10 | experimental | 31 (16 isolates) |
| Bm_cgc_5 | cgMLST | Single-linkage | 5 | experimental | 34 (8 isolates) |
| Bm_cgc_3 | cgMLST | Single-linkage | 3 | experimental | 37 (6 isolates) |
Schemes and loci
Tools
Export:
Analysis: